pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<!--

    Copyright 2020-2024 Google LLC

    Licensed under the Apache License, Version 2.0 (the "License");
    you may not use this file except in compliance with the License.
    You may obtain a copy of the License at

         http://www.apache.org/licenses/LICENSE-2.0

    Unless required by applicable law or agreed to in writing, software
    distributed under the License is distributed on an "AS IS" BASIS,
    WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
    See the License for the specific language governing permissions and
    limitations under the License.

-->
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
  <modelVersion>4.0.0</modelVersion>

  <parent>
    <groupId>com.google.fhir.analytics</groupId>
    <artifactId>root</artifactId>
    <version>0.2.7-SNAPSHOT</version>
  </parent>

  <artifactId>pipelines</artifactId>
  <packaging>pom</packaging>

  <name>FHIR Analytics</name>
  <description>Implementation of pipelines for OpenMRS to FHIR transformation</description>
  <inceptionYear>2020</inceptionYear>

  <modules>
    <module>batch</module>
    <module>streaming</module>
    <module>common</module>
    <module>controller</module>
  </modules>

  <properties>
    <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
    <bunsen.version>0.5.14-SNAPSHOT</bunsen.version>
    <junit.version>4.13.2</junit.version>
    <slf4j.version>2.0.16</slf4j.version>
    <logback.version>1.5.12</logback.version>
    <hapi.fhir.version>7.2.2</hapi.fhir.version>
    <hamcrest.version>3.0</hamcrest.version>
    <mockito.version>5.2.0</mockito.version>
    <jcommander.version>1.82</jcommander.version>
    <license-maven-plugin.version>4.6</license-maven-plugin.version>
    <beam.version>2.56.0</beam.version>
    <auto-value.version>1.11.0</auto-value.version>
  </properties>

  <dependencyManagement>
    <dependencies>
      <dependency>
        <groupId>ca.uhn.hapi.fhir</groupId>
        <artifactId>hapi-fhir-base</artifactId>
        <version>${hapi.fhir.version}</version>
      </dependency>

      <dependency>
        <groupId>ca.uhn.hapi.fhir</groupId>
        <artifactId>hapi-fhir-structures-dstu3</artifactId>
        <version>${hapi.fhir.version}</version>
      </dependency>

      <dependency>
        <groupId>ca.uhn.hapi.fhir</groupId>
        <artifactId>hapi-fhir-structures-r4</artifactId>
        <version>${hapi.fhir.version}</version>
      </dependency>

      <dependency>
        <groupId>ca.uhn.hapi.fhir</groupId>
        <artifactId>hapi-fhir-structures-r4b</artifactId>
        <version>${hapi.fhir.version}</version>
      </dependency>

      <dependency>
        <groupId>ca.uhn.hapi.fhir</groupId>
        <artifactId>hapi-fhir-structures-r5</artifactId>
        <version>${hapi.fhir.version}</version>
      </dependency>

      <dependency>
        <groupId>ca.uhn.hapi.fhir</groupId>
        <artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
        <version>${hapi.fhir.version}</version>
      </dependency>

      <dependency>
        <groupId>ca.uhn.hapi.fhir</groupId>
        <artifactId>hapi-fhir-validation-resources-r4</artifactId>
        <version>${hapi.fhir.version}</version>
      </dependency>

      <dependency>
        <groupId>ca.uhn.hapi.fhir</groupId>
        <artifactId>hapi-fhir-validation-resources-r4b</artifactId>
        <version>${hapi.fhir.version}</version>
      </dependency>

      <dependency>
        <groupId>ca.uhn.hapi.fhir</groupId>
        <artifactId>hapi-fhir-validation-resources-r5</artifactId>
        <version>${hapi.fhir.version}</version>
      </dependency>

      <dependency>
        <groupId>ca.uhn.hapi.fhir</groupId>
        <artifactId>hapi-fhir-client</artifactId>
        <version>${hapi.fhir.version}</version>
      </dependency>

      <dependency>
        <groupId>ca.uhn.hapi.fhir</groupId>
        <artifactId>hapi-fhir-caching-caffeine</artifactId>
        <version>${hapi.fhir.version}</version>
      </dependency>

      <dependency>
        <groupId>org.mockito</groupId>
        <artifactId>mockito-inline</artifactId>
        <version>${mockito.version}</version>
        <scope>test</scope>
      </dependency>

      <dependency>
        <groupId>com.beust</groupId>
        <artifactId>jcommander</artifactId>
        <version>${jcommander.version}</version>
      </dependency>

      <!-- In the controller module, we import the pom of the artifact -
       org.springframework.boot:spring-boot-dependencies to inherit the dependencyManagement
       section of it. The logback versions defined below will take precedence over the versions
       defined in the org.springframework.boot:spring-boot-dependencies artifact because the direct
       dependency takes precedence other the transitive dependency. -->
      <dependency>
        <groupId>ch.qos.logback</groupId>
        <artifactId>logback-classic</artifactId>
        <version>${logback.version}</version>
        <scope>runtime</scope>
      </dependency>

      <dependency>
        <groupId>ch.qos.logback</groupId>
        <artifactId>logback-core</artifactId>
        <version>${logback.version}</version>
        <scope>runtime</scope>
      </dependency>

      <dependency>
        <groupId>ch.qos.logback</groupId>
        <artifactId>logback-access</artifactId>
        <version>${logback.version}</version>
        <scope>runtime</scope>
      </dependency>
    </dependencies>
  </dependencyManagement>

  <dependencies>
    <!-- Use slf4j API with logback. -->
    <dependency>
      <groupId>org.slf4j</groupId>
      <artifactId>slf4j-api</artifactId>
      <version>${slf4j.version}</version>
    </dependency>
    <dependency>
      <groupId>ch.qos.logback</groupId>
      <artifactId>logback-classic</artifactId>
    </dependency>

    <!-- Test deps -->
    <dependency>
      <groupId>junit</groupId>
      <artifactId>junit</artifactId>
      <version>${junit.version}</version>
      <scope>test</scope>
    </dependency>

    <!-- remember to install Lombok IDE plugin: by first ticking the "Enable annotation processing"
      checkbox in Settings->Compiler->Annotation Processors. Secondly, Install the plugin
       of Lombok for idea and restart IDE for change to take effect.
    -->
    <dependency>
      <groupId>org.projectlombok</groupId>
      <artifactId>lombok</artifactId>
      <version>1.18.34</version>
    </dependency>

    <dependency>
      <groupId>org.hamcrest</groupId>
      <artifactId>hamcrest-core</artifactId>
      <version>${hamcrest.version}</version>
      <scope>test</scope>
    </dependency>

    <dependency>
      <groupId>org.hamcrest</groupId>
      <artifactId>hamcrest-library</artifactId>
      <version>${hamcrest.version}</version>
      <scope>test</scope>
    </dependency>

    <dependency>
      <groupId>org.mockito</groupId>
      <artifactId>mockito-inline</artifactId>
    </dependency>

    <!-- Using AutoValue for POJOs used in PCollections and elsewhere. -->
    <dependency>
      <groupId>com.google.auto.value</groupId>
      <artifactId>auto-value-annotations</artifactId>
      <version>${auto-value.version}</version>
    </dependency>
    <dependency>
      <groupId>com.google.auto.value</groupId>
      <artifactId>auto-value</artifactId>
      <version>${auto-value.version}</version>
      <optional>true</optional>
    </dependency>

    <!-- This is to override the old Jackson dependency that Beam has; without
      this the libraries that depend on newer Jackson throw NoClassDefFound.
      TODO remove this dependency once Beam is upgraded. -->
    <dependency>
      <groupId>com.fasterxml.jackson.core</groupId>
      <artifactId>jackson-core</artifactId>
      <version>2.18.1</version>
    </dependency>
  </dependencies>

  <build>
    <pluginManagement>
      <!-- lock down plugins versions to avoid using Maven defaults (may be moved to parent pom) -->
      <plugins>
        <!-- clean lifecycle, see https://maven.apache.org/ref/current/maven-core/lifecycles.html#clean_Lifecycle -->
        <plugin>
          <artifactId>maven-clean-plugin</artifactId>
          <version>3.4.0</version>
        </plugin>
        <!-- default lifecycle, jar packaging: see https://maven.apache.org/ref/current/maven-core/default-bindings.html#Plugin_bindings_for_jar_packaging -->
        <plugin>
          <artifactId>maven-resources-plugin</artifactId>
          <version>3.3.1</version>
        </plugin>
        <plugin>
          <artifactId>maven-compiler-plugin</artifactId>
          <version>3.13.0</version>
        </plugin>
        <plugin>
          <artifactId>maven-surefire-plugin</artifactId>
          <version>3.5.2</version>
        </plugin>
        <!--
           Configures `mvn package` to produce a bundled jar ("fat jar") for runners
           that require this for job submission to a cluster.
         -->
        <plugin>
          <artifactId>maven-shade-plugin</artifactId>
          <version>3.6.0</version>
        </plugin>
        <plugin>
          <artifactId>maven-jar-plugin</artifactId>
          <version>3.4.2</version>
        </plugin>
        <plugin>
          <artifactId>maven-install-plugin</artifactId>
          <version>3.1.3</version>
        </plugin>
        <plugin>
          <artifactId>maven-deploy-plugin</artifactId>
          <version>3.1.3</version>
        </plugin>
        <!-- site lifecycle, see https://maven.apache.org/ref/current/maven-core/lifecycles.html#site_Lifecycle -->
        <plugin>
          <artifactId>maven-site-plugin</artifactId>
          <version>3.21.0</version>
        </plugin>
        <plugin>
          <artifactId>maven-project-info-reports-plugin</artifactId>
          <version>3.8.0</version>
        </plugin>
        <!-- this is for finding files at the root ${main.basedir} easier -->
        <plugin>
          <groupId>org.commonjava.maven.plugins</groupId>
          <artifactId>directory-maven-plugin</artifactId>
          <version>1.0</version>
          <executions>
            <execution>
              <id>directories</id>
              <goals>
                <goal>highest-basedir</goal>
              </goals>
              <phase>validate</phase>
              <configuration>
                <property>main.basedir</property>
              </configuration>
            </execution>
          </executions>
        </plugin>
        <!-- license header -->
        <plugin>
          <groupId>com.mycila</groupId>
          <artifactId>license-maven-plugin</artifactId>
          <version>${license-maven-plugin.version}</version>
          <configuration>
            <header>${main.basedir}${file.separator}license-header.txt</header>
            <includes>
              <include>**/*.java</include>
              <include>**/*.xml</include>
              <include>**/*.properties</include>
            </includes>
            <excludes>
              <exclude>license-format.xml</exclude>
              <exclude>**/target/**</exclude>
              <exclude>.git/**</exclude>
              <exclude>.idea/**</exclude>
              <exclude>.settings/**</exclude>
              <exclude>.externalToolBuilders/</exclude>
              <exclude>nbproject/private/</exclude>
              <exclude>.vscode/**</exclude>
            </excludes>
          </configuration>
          <dependencies>
            <dependency>
              <groupId>com.mycila</groupId>
              <artifactId>license-maven-plugin-git</artifactId>
              <version>${license-maven-plugin.version}</version>
            </dependency>
          </dependencies>
          <executions>
            <execution>
              <id>add-license</id>
              <goals>
                <goal>format</goal>
              </goals>
              <phase>process-sources</phase>
            </execution>
          </executions>
        </plugin>
        <plugin>
          <groupId>org.codehaus.mojo</groupId>
          <artifactId>exec-maven-plugin</artifactId>
          <version>3.5.0</version>
        </plugin>
      </plugins>
    </pluginManagement>

    <!-- plugins that we want to run for all modules -->
    <plugins>
      <plugin>
        <groupId>org.commonjava.maven.plugins</groupId>
        <artifactId>directory-maven-plugin</artifactId>
      </plugin>
      <plugin>
        <groupId>com.mycila</groupId>
        <artifactId>license-maven-plugin</artifactId>
      </plugin>
      <plugin>
        <groupId>com.diffplug.spotless</groupId>
        <artifactId>spotless-maven-plugin</artifactId>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-compiler-plugin</artifactId>
        <configuration>
          <source>17</source>
          <target>17</target>
          <!-- To retain parameter names for compiled classes, this is needed for Spring framework
            with versions >= 6.1. See https://github.com/spring-projects/spring-framework/wiki/Upgrading-to-Spring-Framework-6.x#parameter-name-retention
            for the details -->
          <parameters>true</parameters>
          <compilerArgs>
            <!-- Enable access to the packages at compile time -->
            <arg>--add-exports=java.base/jdk.internal.misc=ALL-UNNAMED</arg>
          </compilerArgs>
        </configuration>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-surefire-plugin</artifactId>
        <configuration>
          <!-- Enable access to the packages at run time -->
          <argLine>@{argLine} --add-opens=java.base/jdk.internal.misc=ALL-UNNAMED</argLine>
        </configuration>
      </plugin>
    </plugins>
  </build>

</project>