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non-split subgenome assignment #13

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smirsyad22 opened this issue Jan 15, 2025 · 0 comments
Open

non-split subgenome assignment #13

smirsyad22 opened this issue Jan 15, 2025 · 0 comments

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@smirsyad22
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Hello,

I have a scaffold assembly of a hexaploid plant, and I want to assign those scaffolds to three subgenomes. The polycracker runs great, but I noticed that it assigns different regions for the same scaffold to a different subgenome. Is it possible to assign every scaffold to a certain subgenome without splitting it into different regions? Or is it possible to make the output assign each scaffold to one subgenome?

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