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LSD for single-site spatial analysis with SpATS.
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Module GBLUP implemented.
- Added a plot and a table with variance components estimates.
- Added the estimation of genomic heritability or marker-based heritability.
- Added a plot for checking the accuracy of the model by trait. (Observed values vs Predicted values).
- Added action button for downloading a summary of the analysis.
- Added a corrPlot with the genetic correlations among traits.
- Added a dendrogram and a Principal Components Analysis (PCA) for the GEBVs.
- Added a table with predicted.values, GEBVs, standard.errors and reliabilities for each of the genotypes and each of the traits.
- Added a plot for comparing the GEBVs against the reliability.
- Added action button for downloading table with predictions and GEBVs.
- Added a tab with marker effects by trait.
- Added a plot with Estimated Squared-Marker effect for multiple traits. In addition, if the genetic map was imported you will be able to visualize this plot with colors by chromosome (similar to a manhattan plot).
- Added action button for downloading markers effects.
- Added an additional window for seeing the ranking of the GEBVs.
- Improved writing style.
- Fixed minor issues.
- First version.