From c44b820258f0e9783d17ad899883b71ca4b82743 Mon Sep 17 00:00:00 2001 From: mverouden Date: Fri, 11 Aug 2017 14:06:14 +0200 Subject: [PATCH] modified links to refer to CIP-RIU instead of c5sire, asked Reinhard to fix the README.Rmd file --- README.md | 110 +++++++++++++++++++++++++++--------------------------- 1 file changed, 55 insertions(+), 55 deletions(-) diff --git a/README.md b/README.md index e59fa91..2f2a238 100644 --- a/README.md +++ b/README.md @@ -14,18 +14,18 @@ It can be installed using: ``` r install.packages("devtools") -devtools::install_github("c5sire/brapi") +devtools::install_github("CIP-RIU/brapi") ``` How to use the package ---------------------- -See [tutorial](https://github.com/c5sire/brapi/blob/master/inst/doc/tutorial.Rmd). +See [tutorial](https://github.com/CIP_RIU/brapi/blob/master/inst/doc/tutorial.Rmd). Documentation of JSON response/requests --------------------------------------- -Follow the links in the table below or see the inst/apidocs directory for examples: [apidocs](https://github.com/c5sire/brapi/blob/master/inst/apidocs/README.md) +Follow the links in the table below or see the inst/apidocs directory for examples: [apidocs](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/README.md) Implementation status --------------------- @@ -34,55 +34,55 @@ Out of 52 BrAPI calls currently **52 (100%)** are implemented in this package. | group | name | R.function | |:------------------------------------------------------------------------------------------------------------|:-------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------| -| [Authentication](https://github.com/plantbreeding/API/blob/master/Specification/Authentication) | [Authentication](https://github.com/plantbreeding/API/blob/master/Specification/Authentication/Authentication.md) | [ba\_login](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_login.md) | -| [Authentication](https://github.com/plantbreeding/API/blob/master/Specification/Authentication) | [Authentication](https://github.com/plantbreeding/API/blob/master/Specification/Authentication/Authentication.md) | [ba\_logout](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_logout.md) | -| [Calls](https://github.com/plantbreeding/API/blob/master/Specification/Calls) | [Calls](https://github.com/plantbreeding/API/blob/master/Specification/Calls/Calls.md) | [ba\_calls](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_calls.md) | -| [Crops](https://github.com/plantbreeding/API/blob/master/Specification/Crops) | [ListCrops](https://github.com/plantbreeding/API/blob/master/Specification/Crops/ListCrops.md) | [ba\_crops](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_crops.md) | -| [GenomeMaps](https://github.com/plantbreeding/API/blob/master/Specification/GenomeMaps) | [ListOfGenomeMaps](https://github.com/plantbreeding/API/blob/master/Specification/GenomeMaps/ListOfGenomeMaps.md) | [ba\_genomemaps](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_genomemaps.md) | -| [GenomeMaps](https://github.com/plantbreeding/API/blob/master/Specification/GenomeMaps) | [GenomeMapData](https://github.com/plantbreeding/API/blob/master/Specification/GenomeMaps/GenomeMapData.md) | [ba\_genomemaps\_data](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_genomemaps_data.md) | -| [GenomeMaps](https://github.com/plantbreeding/API/blob/master/Specification/GenomeMaps) | [GenomeMapDataByRangeOnLinkageGroup](https://github.com/plantbreeding/API/blob/master/Specification/GenomeMaps/GenomeMapDataByRangeOnLinkageGroup.md) | [ba\_genomemaps\_data\_range](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_genomemaps_data_range.md) | -| [GenomeMaps](https://github.com/plantbreeding/API/blob/master/Specification/GenomeMaps) | [GenomeMapDetails](https://github.com/plantbreeding/API/blob/master/Specification/GenomeMaps/GenomeMapDetails.md) | [ba\_genomemaps\_details](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_genomemaps_details.md) | -| [Germplasm](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm) | [GermplasmDetailsByGermplasmDbId](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm/GermplasmDetailsByGermplasmDbId.md) | [ba\_germplasm\_details](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_germplasm_details.md) | -| [Germplasm](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm) | [GermplasmDetailsListByStudyDbId](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm/GermplasmDetailsListByStudyDbId.md) | [ba\_germplasm\_details\_study](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_germplasm_details_study.md) | -| [Germplasm](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm) | [GermplasmMarkerprofiles](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm/GermplasmMarkerprofiles.md) | [ba\_germplasm\_markerprofiles](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_germplasm_markerprofiles.md) | -| [Germplasm](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm) | [GermplasmPedigree](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm/GermplasmPedigree.md) | [ba\_germplasm\_pedigree](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_germplasm_pedigree.md) | -| [Germplasm](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm) | [GermplasmSearchGET](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm/GermplasmSearchGET.md) | [ba\_germplasm\_search](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_germplasm_search.md) | -| [Germplasm](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm) | [GermplasmSearchPOST](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm/GermplasmSearchPOST.md) | [ba\_germplasm\_search](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_germplasm_search.md) | -| [GermplasmAttributes](https://github.com/plantbreeding/API/blob/master/Specification/GermplasmAttributes) | [ListAttributesByAttributeCategoryDbId](https://github.com/plantbreeding/API/blob/master/Specification/GermplasmAttributes/ListAttributesByAttributeCategoryDbId.md) | [ba\_germplasmattributes](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_germplasmattributes.md) | -| [GermplasmAttributes](https://github.com/plantbreeding/API/blob/master/Specification/GermplasmAttributes) | [ListAttributeCategories](https://github.com/plantbreeding/API/blob/master/Specification/GermplasmAttributes/ListAttributeCategories.md) | [ba\_germplasmattributes\_categories](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_germplasmattributes_categories.md) | -| [GermplasmAttributes](https://github.com/plantbreeding/API/blob/master/Specification/GermplasmAttributes) | [GermplasmAttributeValuesByGermplasmDbId](https://github.com/plantbreeding/API/blob/master/Specification/GermplasmAttributes/GermplasmAttributeValuesByGermplasmDbId.md) | [ba\_germplasmattributes\_details](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_germplasmattributes_details.md) | -| [Locations](https://github.com/plantbreeding/API/blob/master/Specification/Locations) | [ListLocations](https://github.com/plantbreeding/API/blob/master/Specification/Locations/ListLocations.md) | [ba\_locations](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_locations.md) | -| [MarkerProfiles](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles) | [MarkerProfileAlleleMatrix](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles/MarkerProfileAlleleMatrix.md) | [ba\_markerprofiles\_allelematrix\_search](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_markerprofiles_allelematrix_search.md) | -| [MarkerProfiles](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles) | [ScoresThroughPOST](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles/ScoresThroughPOST.md) | [ba\_markerprofiles\_allelematrix\_search](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_markerprofiles_allelematrix_search.md) | -| [MarkerProfiles](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles) | [MarkerProfileData](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles/MarkerProfileData.md) | [ba\_markerprofiles\_details](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_markerprofiles_details.md) | -| [MarkerProfiles](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles) | [MarkerProfileSearchPost](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles/MarkerProfileSearchPost.md) | [ba\_markerprofiles\_search](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_markerprofiles_search.md) | -| [MarkerProfiles](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles) | [MarkerProfileSearch](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles/MarkerProfileSearch.md) | [ba\_markerprofiles\_search](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_markerprofiles_search.md) | -| [Markers](https://github.com/plantbreeding/API/blob/master/Specification/Markers) | [MarkerDetailsByMarkerDbId](https://github.com/plantbreeding/API/blob/master/Specification/Markers/MarkerDetailsByMarkerDbId.md) | [ba\_markers\_details](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_markers_details.md) | -| [Markers](https://github.com/plantbreeding/API/blob/master/Specification/Markers) | [MarkerSearch](https://github.com/plantbreeding/API/blob/master/Specification/Markers/MarkerSearch.md) | [ba\_markers\_search](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_markers_search.md) | -| [ObservationVariables](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables) | [VariableList](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables/VariableList.md) | [ba\_observationvariables](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_observationvariables.md) | -| [ObservationVariables](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables) | [VariableDataTypeList](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables/VariableDataTypeList.md) | [ba\_observationvariables\_datatypes](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_observationvariables_datatypes.md) | -| [ObservationVariables](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables) | [VariableDetails](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables/VariableDetails.md) | [ba\_observationvariables\_details](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_observationvariables_details.md) | -| [ObservationVariables](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables) | [VariableOntologyList](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables/VariableOntologyList.md) | [ba\_observationvariables\_ontologies](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_observationvariables_ontologies.md) | -| [ObservationVariables](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables) | [VariableSearch](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables/VariableSearch.md) | [ba\_observationvariables\_search](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_observationvariables_search.md) | -| [Phenotypes](https://github.com/plantbreeding/API/blob/master/Specification/Phenotypes) | [PhenotypeSearch](https://github.com/plantbreeding/API/blob/master/Specification/Phenotypes/PhenotypeSearch.md) | [ba\_phenotype\_search](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_phenotype_search.md) | -| [Programs](https://github.com/plantbreeding/API/blob/master/Specification/Programs) | [ListPrograms](https://github.com/plantbreeding/API/blob/master/Specification/Programs/ListPrograms.md) | [ba\_programs](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_programs.md) | -| [Programs](https://github.com/plantbreeding/API/blob/master/Specification/Programs) | [ProgramSearch](https://github.com/plantbreeding/API/blob/master/Specification/Programs/ProgramSearch.md) | [ba\_programs\_search](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_programs_search.md) | -| [Samples](https://github.com/plantbreeding/API/blob/master/Specification/Samples) | [TakeASample](https://github.com/plantbreeding/API/blob/master/Specification/Samples/TakeASample.md) | [ba\_samples\_save](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_samples_save.md) | -| [Samples](https://github.com/plantbreeding/API/blob/master/Specification/Samples) | [RetrieveSampleMetadata](https://github.com/plantbreeding/API/blob/master/Specification/Samples/RetrieveSampleMetadata.md) | [ba\_samples](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_samples.md) | -| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [StudyDetails](https://github.com/plantbreeding/API/blob/master/Specification/Studies/StudyDetails.md) | [ba\_studies\_details](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_studies_details.md) | -| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [ListObservationLevels](https://github.com/plantbreeding/API/blob/master/Specification/Studies/ListObservationLevels.md) | [ba\_studies\_observationlevels](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_studies_observationlevels.md) | -| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [GetObservationUnitsByObservationVariableIds](https://github.com/plantbreeding/API/blob/master/Specification/Studies/GetObservationUnitsByObservationVariableIds.md) | [ba\_studies\_observations](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_studies_observations.md) | -| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [ObservationUnitDetails](https://github.com/plantbreeding/API/blob/master/Specification/Studies/ObservationUnitDetails.md) | [ba\_studies\_observationunits](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_studies_observationunits.md) | -| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [SaveOrUpdateObservationUnits](https://github.com/plantbreeding/API/blob/master/Specification/Studies/SaveOrUpdateObservationUnits.md) | [ba\_studies\_observationunits\_save](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_studies_observationunits_save.md) | -| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [StudyObservationVariables](https://github.com/plantbreeding/API/blob/master/Specification/Studies/StudyObservationVariables.md) | [ba\_studies\_observationvariables](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_studies_observationvariables.md) | -| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [ListStudySummaries](https://github.com/plantbreeding/API/blob/master/Specification/Studies/ListStudySummaries.md) | [ba\_studies\_search](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_studies_search.md) | -| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [SearchStudies](https://github.com/plantbreeding/API/blob/master/Specification/Studies/SearchStudies.md) | [ba\_studies\_search](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_studies_search.md) | -| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [ListSeasons](https://github.com/plantbreeding/API/blob/master/Specification/Studies/ListSeasons.md) | [ba\_studies\_seasons](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_studies_seasons.md) | -| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [ListStudyTypes](https://github.com/plantbreeding/API/blob/master/Specification/Studies/ListStudyTypes.md) | [ba\_studies\_studytypes](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_studies_studytypes.md) | -| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [StudyObservationUnitsAsTable](https://github.com/plantbreeding/API/blob/master/Specification/Studies/StudyObservationUnitsAsTable.md) | [ba\_studies\_table](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_studies_table.md) | -| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [PlotLayoutDetails](https://github.com/plantbreeding/API/blob/master/Specification/Studies/PlotLayoutDetails.md) | [ba\_studies\_layout](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_studies_layout.md) | -| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [StudyObservationUnitsAsTableSave](https://github.com/plantbreeding/API/blob/master/Specification/Studies/StudyObservationUnitsAsTableSave.md) | [ba\_studies\_table\_save](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_studies_table_save.md) | -| [Traits](https://github.com/plantbreeding/API/blob/master/Specification/Traits) | [ListAllTraits](https://github.com/plantbreeding/API/blob/master/Specification/Traits/ListAllTraits.md) | [ba\_traits](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_traits.md) | -| [Traits](https://github.com/plantbreeding/API/blob/master/Specification/Traits) | [TraitDetails](https://github.com/plantbreeding/API/blob/master/Specification/Traits/TraitDetails.md) | [ba\_traits\_details](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_traits_details.md) | -| [Trials](https://github.com/plantbreeding/API/blob/master/Specification/Trials) | [ListTrialSummaries](https://github.com/plantbreeding/API/blob/master/Specification/Trials/ListTrialSummaries.md) | [ba\_trials](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_trials.md) | -| [Trials](https://github.com/plantbreeding/API/blob/master/Specification/Trials) | [GetTrialById](https://github.com/plantbreeding/API/blob/master/Specification/Trials/GetTrialById.md) | [ba\_trials\_details](https://github.com/c5sire/brapi/blob/master/inst/apidocs/ba_trials_details.md) | +| [Authentication](https://github.com/plantbreeding/API/blob/master/Specification/Authentication) | [Authentication](https://github.com/plantbreeding/API/blob/master/Specification/Authentication/Authentication.md) | [ba\_login](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_login.md) | +| [Authentication](https://github.com/plantbreeding/API/blob/master/Specification/Authentication) | [Authentication](https://github.com/plantbreeding/API/blob/master/Specification/Authentication/Authentication.md) | [ba\_logout](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_logout.md) | +| [Calls](https://github.com/plantbreeding/API/blob/master/Specification/Calls) | [Calls](https://github.com/plantbreeding/API/blob/master/Specification/Calls/Calls.md) | [ba\_calls](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_calls.md) | +| [Crops](https://github.com/plantbreeding/API/blob/master/Specification/Crops) | [ListCrops](https://github.com/plantbreeding/API/blob/master/Specification/Crops/ListCrops.md) | [ba\_crops](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_crops.md) | +| [GenomeMaps](https://github.com/plantbreeding/API/blob/master/Specification/GenomeMaps) | [ListOfGenomeMaps](https://github.com/plantbreeding/API/blob/master/Specification/GenomeMaps/ListOfGenomeMaps.md) | [ba\_genomemaps](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_genomemaps.md) | +| [GenomeMaps](https://github.com/plantbreeding/API/blob/master/Specification/GenomeMaps) | [GenomeMapData](https://github.com/plantbreeding/API/blob/master/Specification/GenomeMaps/GenomeMapData.md) | [ba\_genomemaps\_data](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_genomemaps_data.md) | +| [GenomeMaps](https://github.com/plantbreeding/API/blob/master/Specification/GenomeMaps) | [GenomeMapDataByRangeOnLinkageGroup](https://github.com/plantbreeding/API/blob/master/Specification/GenomeMaps/GenomeMapDataByRangeOnLinkageGroup.md) | [ba\_genomemaps\_data\_range](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_genomemaps_data_range.md) | +| [GenomeMaps](https://github.com/plantbreeding/API/blob/master/Specification/GenomeMaps) | [GenomeMapDetails](https://github.com/plantbreeding/API/blob/master/Specification/GenomeMaps/GenomeMapDetails.md) | [ba\_genomemaps\_details](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_genomemaps_details.md) | +| [Germplasm](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm) | [GermplasmDetailsByGermplasmDbId](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm/GermplasmDetailsByGermplasmDbId.md) | [ba\_germplasm\_details](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_germplasm_details.md) | +| [Germplasm](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm) | [GermplasmDetailsListByStudyDbId](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm/GermplasmDetailsListByStudyDbId.md) | [ba\_germplasm\_details\_study](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_germplasm_details_study.md) | +| [Germplasm](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm) | [GermplasmMarkerprofiles](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm/GermplasmMarkerprofiles.md) | [ba\_germplasm\_markerprofiles](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_germplasm_markerprofiles.md) | +| [Germplasm](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm) | [GermplasmPedigree](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm/GermplasmPedigree.md) | [ba\_germplasm\_pedigree](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_germplasm_pedigree.md) | +| [Germplasm](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm) | [GermplasmSearchGET](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm/GermplasmSearchGET.md) | [ba\_germplasm\_search](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_germplasm_search.md) | +| [Germplasm](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm) | [GermplasmSearchPOST](https://github.com/plantbreeding/API/blob/master/Specification/Germplasm/GermplasmSearchPOST.md) | [ba\_germplasm\_search](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_germplasm_search.md) | +| [GermplasmAttributes](https://github.com/plantbreeding/API/blob/master/Specification/GermplasmAttributes) | [ListAttributesByAttributeCategoryDbId](https://github.com/plantbreeding/API/blob/master/Specification/GermplasmAttributes/ListAttributesByAttributeCategoryDbId.md) | [ba\_germplasmattributes](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_germplasmattributes.md) | +| [GermplasmAttributes](https://github.com/plantbreeding/API/blob/master/Specification/GermplasmAttributes) | [ListAttributeCategories](https://github.com/plantbreeding/API/blob/master/Specification/GermplasmAttributes/ListAttributeCategories.md) | [ba\_germplasmattributes\_categories](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_germplasmattributes_categories.md) | +| [GermplasmAttributes](https://github.com/plantbreeding/API/blob/master/Specification/GermplasmAttributes) | [GermplasmAttributeValuesByGermplasmDbId](https://github.com/plantbreeding/API/blob/master/Specification/GermplasmAttributes/GermplasmAttributeValuesByGermplasmDbId.md) | [ba\_germplasmattributes\_details](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_germplasmattributes_details.md) | +| [Locations](https://github.com/plantbreeding/API/blob/master/Specification/Locations) | [ListLocations](https://github.com/plantbreeding/API/blob/master/Specification/Locations/ListLocations.md) | [ba\_locations](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_locations.md) | +| [MarkerProfiles](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles) | [MarkerProfileAlleleMatrix](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles/MarkerProfileAlleleMatrix.md) | [ba\_markerprofiles\_allelematrix\_search](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_markerprofiles_allelematrix_search.md) | +| [MarkerProfiles](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles) | [ScoresThroughPOST](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles/ScoresThroughPOST.md) | [ba\_markerprofiles\_allelematrix\_search](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_markerprofiles_allelematrix_search.md) | +| [MarkerProfiles](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles) | [MarkerProfileData](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles/MarkerProfileData.md) | [ba\_markerprofiles\_details](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_markerprofiles_details.md) | +| [MarkerProfiles](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles) | [MarkerProfileSearchPost](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles/MarkerProfileSearchPost.md) | [ba\_markerprofiles\_search](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_markerprofiles_search.md) | +| [MarkerProfiles](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles) | [MarkerProfileSearch](https://github.com/plantbreeding/API/blob/master/Specification/MarkerProfiles/MarkerProfileSearch.md) | [ba\_markerprofiles\_search](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_markerprofiles_search.md) | +| [Markers](https://github.com/plantbreeding/API/blob/master/Specification/Markers) | [MarkerDetailsByMarkerDbId](https://github.com/plantbreeding/API/blob/master/Specification/Markers/MarkerDetailsByMarkerDbId.md) | [ba\_markers\_details](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_markers_details.md) | +| [Markers](https://github.com/plantbreeding/API/blob/master/Specification/Markers) | [MarkerSearch](https://github.com/plantbreeding/API/blob/master/Specification/Markers/MarkerSearch.md) | [ba\_markers\_search](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_markers_search.md) | +| [ObservationVariables](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables) | [VariableList](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables/VariableList.md) | [ba\_observationvariables](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_observationvariables.md) | +| [ObservationVariables](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables) | [VariableDataTypeList](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables/VariableDataTypeList.md) | [ba\_observationvariables\_datatypes](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_observationvariables_datatypes.md) | +| [ObservationVariables](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables) | [VariableDetails](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables/VariableDetails.md) | [ba\_observationvariables\_details](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_observationvariables_details.md) | +| [ObservationVariables](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables) | [VariableOntologyList](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables/VariableOntologyList.md) | [ba\_observationvariables\_ontologies](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_observationvariables_ontologies.md) | +| [ObservationVariables](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables) | [VariableSearch](https://github.com/plantbreeding/API/blob/master/Specification/ObservationVariables/VariableSearch.md) | [ba\_observationvariables\_search](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_observationvariables_search.md) | +| [Phenotypes](https://github.com/plantbreeding/API/blob/master/Specification/Phenotypes) | [PhenotypeSearch](https://github.com/plantbreeding/API/blob/master/Specification/Phenotypes/PhenotypeSearch.md) | [ba\_phenotype\_search](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_phenotype_search.md) | +| [Programs](https://github.com/plantbreeding/API/blob/master/Specification/Programs) | [ListPrograms](https://github.com/plantbreeding/API/blob/master/Specification/Programs/ListPrograms.md) | [ba\_programs](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_programs.md) | +| [Programs](https://github.com/plantbreeding/API/blob/master/Specification/Programs) | [ProgramSearch](https://github.com/plantbreeding/API/blob/master/Specification/Programs/ProgramSearch.md) | [ba\_programs\_search](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_programs_search.md) | +| [Samples](https://github.com/plantbreeding/API/blob/master/Specification/Samples) | [TakeASample](https://github.com/plantbreeding/API/blob/master/Specification/Samples/TakeASample.md) | [ba\_samples\_save](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_samples_save.md) | +| [Samples](https://github.com/plantbreeding/API/blob/master/Specification/Samples) | [RetrieveSampleMetadata](https://github.com/plantbreeding/API/blob/master/Specification/Samples/RetrieveSampleMetadata.md) | [ba\_samples](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_samples.md) | +| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [StudyDetails](https://github.com/plantbreeding/API/blob/master/Specification/Studies/StudyDetails.md) | [ba\_studies\_details](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_studies_details.md) | +| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [ListObservationLevels](https://github.com/plantbreeding/API/blob/master/Specification/Studies/ListObservationLevels.md) | [ba\_studies\_observationlevels](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_studies_observationlevels.md) | +| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [GetObservationUnitsByObservationVariableIds](https://github.com/plantbreeding/API/blob/master/Specification/Studies/GetObservationUnitsByObservationVariableIds.md) | [ba\_studies\_observations](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_studies_observations.md) | +| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [ObservationUnitDetails](https://github.com/plantbreeding/API/blob/master/Specification/Studies/ObservationUnitDetails.md) | [ba\_studies\_observationunits](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_studies_observationunits.md) | +| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [SaveOrUpdateObservationUnits](https://github.com/plantbreeding/API/blob/master/Specification/Studies/SaveOrUpdateObservationUnits.md) | [ba\_studies\_observationunits\_save](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_studies_observationunits_save.md) | +| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [StudyObservationVariables](https://github.com/plantbreeding/API/blob/master/Specification/Studies/StudyObservationVariables.md) | [ba\_studies\_observationvariables](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_studies_observationvariables.md) | +| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [ListStudySummaries](https://github.com/plantbreeding/API/blob/master/Specification/Studies/ListStudySummaries.md) | [ba\_studies\_search](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_studies_search.md) | +| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [SearchStudies](https://github.com/plantbreeding/API/blob/master/Specification/Studies/SearchStudies.md) | [ba\_studies\_search](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_studies_search.md) | +| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [ListSeasons](https://github.com/plantbreeding/API/blob/master/Specification/Studies/ListSeasons.md) | [ba\_studies\_seasons](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_studies_seasons.md) | +| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [ListStudyTypes](https://github.com/plantbreeding/API/blob/master/Specification/Studies/ListStudyTypes.md) | [ba\_studies\_studytypes](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_studies_studytypes.md) | +| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [StudyObservationUnitsAsTable](https://github.com/plantbreeding/API/blob/master/Specification/Studies/StudyObservationUnitsAsTable.md) | [ba\_studies\_table](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_studies_table.md) | +| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [PlotLayoutDetails](https://github.com/plantbreeding/API/blob/master/Specification/Studies/PlotLayoutDetails.md) | [ba\_studies\_layout](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_studies_layout.md) | +| [Studies](https://github.com/plantbreeding/API/blob/master/Specification/Studies) | [StudyObservationUnitsAsTableSave](https://github.com/plantbreeding/API/blob/master/Specification/Studies/StudyObservationUnitsAsTableSave.md) | [ba\_studies\_table\_save](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_studies_table_save.md) | +| [Traits](https://github.com/plantbreeding/API/blob/master/Specification/Traits) | [ListAllTraits](https://github.com/plantbreeding/API/blob/master/Specification/Traits/ListAllTraits.md) | [ba\_traits](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_traits.md) | +| [Traits](https://github.com/plantbreeding/API/blob/master/Specification/Traits) | [TraitDetails](https://github.com/plantbreeding/API/blob/master/Specification/Traits/TraitDetails.md) | [ba\_traits\_details](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_traits_details.md) | +| [Trials](https://github.com/plantbreeding/API/blob/master/Specification/Trials) | [ListTrialSummaries](https://github.com/plantbreeding/API/blob/master/Specification/Trials/ListTrialSummaries.md) | [ba\_trials](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_trials.md) | +| [Trials](https://github.com/plantbreeding/API/blob/master/Specification/Trials) | [GetTrialById](https://github.com/plantbreeding/API/blob/master/Specification/Trials/GetTrialById.md) | [ba\_trials\_details](https://github.com/CIP-RIU/brapi/blob/master/inst/apidocs/ba_trials_details.md) |