From 9d4d07757fc41c28a70d1df946812604a57d537d Mon Sep 17 00:00:00 2001
From: Jody Phelan <jody.phelan@lshtm.ac.uk>
Date: Fri, 29 Mar 2024 18:34:36 +0100
Subject: [PATCH] Update python-app.yml

---
 .github/workflows/python-app.yml | 19 ++++++++-----------
 1 file changed, 8 insertions(+), 11 deletions(-)

diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml
index 4cb1d52..e4d4009 100644
--- a/.github/workflows/python-app.yml
+++ b/.github/workflows/python-app.yml
@@ -18,17 +18,14 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v3
-    - name: Set up miniconda
-      run: |
-        wget https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh
-        bash Miniforge3-Linux-x86_64.sh -b
-        ~/miniforge3/condabin/conda init
-        source /home/runner/.bashrc
-        conda config --add channels defaults
-        conda config --add channels bioconda
-        conda config --add channels conda-forge
-        conda config --set channel_priority strict
+    - uses: actions/checkout@v4
+    - uses: conda-incubator/setup-miniconda@v3
+      with:
+          python-version: 3.10
+          mamba-version: "*"
+          channels: conda-forge,bioconda,defaults
+          channel-priority: true
+
     - name: install dependancies
       run: |
         /home/runner/miniforge3/bin/mamba install tb-profiler -y