diff --git a/tb-profiler b/tb-profiler index adac1bf..3687324 100644 --- a/tb-profiler +++ b/tb-profiler @@ -2,6 +2,7 @@ import sys import pathogenprofiler as pp from pathogenprofiler import TempFilePrefix +import pathogenprofiler.variant_calling as vc import argparse from rich_argparse import ArgumentDefaultsRichHelpFormatter import json @@ -348,7 +349,7 @@ def int_2_or_more(arg): -variant_callers = [cls.__software__ for cls in pp.variant_calling.VariantCaller.__subclasses__()] +variant_callers = [cls.__software__ for cls in vc.VariantCaller.__subclasses__()]