From bc23fd95ed42831cd2874b47ef4e0f126c6932c7 Mon Sep 17 00:00:00 2001
From: Jody Phelan <jody.phelan@lshtm.ac.uk>
Date: Thu, 4 Jul 2024 09:03:21 +0200
Subject: [PATCH] bug

---
 tb-profiler | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/tb-profiler b/tb-profiler
index adac1bf..3687324 100644
--- a/tb-profiler
+++ b/tb-profiler
@@ -2,6 +2,7 @@
 import sys
 import pathogenprofiler as pp
 from pathogenprofiler import TempFilePrefix
+import pathogenprofiler.variant_calling as vc
 import argparse
 from rich_argparse import ArgumentDefaultsRichHelpFormatter
 import json
@@ -348,7 +349,7 @@ def int_2_or_more(arg):
 
 
 
-variant_callers = [cls.__software__ for cls in pp.variant_calling.VariantCaller.__subclasses__()]
+variant_callers = [cls.__software__ for cls in vc.VariantCaller.__subclasses__()]