From c42adff8a56f03f4c09a271cfaf696987484205a Mon Sep 17 00:00:00 2001
From: Maeruf <93967945+marvinkobit@users.noreply.github.com>
Date: Tue, 21 May 2024 12:02:17 +0300
Subject: [PATCH] itol collate readme

---
 README.md | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/README.md b/README.md
index cd8b713..b5d867e 100644
--- a/README.md
+++ b/README.md
@@ -166,6 +166,11 @@ Several files are produced by the `tb-profile collate` function. Among these are
 *   Drug resistance classes \(Sensitive, RR-TB, HR-TB, MDR-TB, Pre-XDR-TB, XDR\)
 *   Drug resistance calls for individual drugs, were filled circles represent resistance.
 
+If you would like the ITOL config files to be generated add the `itol` argument to the `collate` function.
+```bash
+tb-profiler collate --itol
+```
+
 ![](https://github.com/jodyphelan/jodyphelan.github.io/raw/master/img/itol_example.png)
 
 ## Citation