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Unable to download tbprofiler_results.tgz #55

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polecenji opened this issue May 25, 2023 · 8 comments
Open

Unable to download tbprofiler_results.tgz #55

polecenji opened this issue May 25, 2023 · 8 comments

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@polecenji
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Describe the bug
When downloading the file, an error message appears: 'Page not found'

To Reproduce
Steps to reproduce the behavior:
python tbdb/scripts/generate_confidence.py download

Screenshots
image

Desktop (please complete the following information):

  • OS: Linux
  • Python version: 3.9.7
@jodyphelan
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Hi @polecenji

The confidence acording to the WHO mutation list (https://www.who.int/publications/i/item/9789240028173) is now included in the CSV as a default so this step is no longer required when building the files for tb-profiler.

Which version of tb-profiler are you using?

@polecenji
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polecenji commented May 25, 2023 via email

@polecenji
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Hi @polecenji

The confidence acording to the WHO mutation list (https://www.who.int/publications/i/item/9789240028173) is now included in the CSV as a default so this step is no longer required when building the files for tb-profiler.

Which version of tb-profiler are you using?

V2.8.12 and V4.2.2,The software code for version 2 has been partially optimized by myself, and during use, it was found that the old and new versions of TBDB are incompatible

@polecenji
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Hi @polecenji

The confidence acording to the WHO mutation list (https://www.who.int/publications/i/item/9789240028173) is now included in the CSV as a default so this step is no longer required when building the files for tb-profiler.

Which version of tb-profiler are you using?

Hello, I would like to download the drug sensitivity test results of over 17000 samples in the article. Where should I obtain them?

@jodyphelan
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You can download them here: tbprofiler_results.tgz

@polecenji
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You can download them here: tbprofiler_results.tgz

What are the meanings of '0', '1', and 'NA' in the table "tb.dst.csv"?

@jodyphelan
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Resistant: 1
Sensitive: 0
Not tested: NA

@polecenji
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polecenji commented Oct 3, 2023 via email

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