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We have talked before about writing a script to confirm full gff3 format agreement, and I have found someone else's attempt at doing this (link below). This might be a good reference if we plan on writing such a script ourselves.
Thanks for submitting this. You're right, that implementation's documentation is a good starting point, though it allows a lot of room for expansion. It doesn't check anything about encoding conventions for different feature types that the GFF3 specification describes, for example, such as for matches or gene models.
We have talked before about writing a script to confirm full gff3 format agreement, and I have found someone else's attempt at doing this (link below). This might be a good reference if we plan on writing such a script ourselves.
http://modencode.oicr.on.ca/validate_gff3_online/validate_gff3.html
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