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GFF3 validator #17

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ktretina opened this issue Jun 13, 2014 · 1 comment
Open

GFF3 validator #17

ktretina opened this issue Jun 13, 2014 · 1 comment

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@ktretina
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We have talked before about writing a script to confirm full gff3 format agreement, and I have found someone else's attempt at doing this (link below). This might be a good reference if we plan on writing such a script ourselves.

http://modencode.oicr.on.ca/validate_gff3_online/validate_gff3.html

@jorvis
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jorvis commented Jun 14, 2014

Thanks for submitting this. You're right, that implementation's documentation is a good starting point, though it allows a lot of room for expansion. It doesn't check anything about encoding conventions for different feature types that the GFF3 specification describes, for example, such as for matches or gene models.

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