-
Notifications
You must be signed in to change notification settings - Fork 17
/
generateBibtex.py
189 lines (167 loc) · 8.2 KB
/
generateBibtex.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
# !/usr/bin/python3
# The MIT License (MIT)
# Copyright (c) 2018 - Universidad del Cauca, Juan Ruiz-Rosero
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
# MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
# IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
# DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
# OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE
# OR OTHER DEALINGS IN THE SOFTWARE.
import paperUtils
import paperSave
import globalVar
import os
import matplotlib.pyplot as plt
import numpy as np
import graphUtils
import sys
import re
import unidecode
import sys
import os
def generateBibtex(inputLatexFile):
print("\n\nGenerating BibTeX")
print("=================\n")
fileobject = (open(inputLatexFile, 'r'))
rawtext = fileobject.read()
fileobject.close()
start = '\\begin{document}'
end = '\\begin{thebibliography}'
bodytext = rawtext[rawtext.find(start) + len(start):rawtext.rfind(end)]
# Extracts the cites keys
citesDict = {}
for char in range(0, len(bodytext) - 10):
if bodytext[char:char + 6] == '\\cite{':
cite = ''
char += len('\\cite{')
while (bodytext[char] != '}'):
if (bodytext[char] == ' '):
char += 1
elif (bodytext[char] == ','):
char += 1
if cite in citesDict.keys():
cite = ''
else:
citesDict[cite] = False
cite = ''
else:
cite += (bodytext[char])
char += 1
if cite in citesDict.keys():
pass
else:
citesDict[cite] = False
print("%d cites found." % len(citesDict))
# Start paper list empty
papersDict = []
papersToBib = []
# Open the storage database and add to papersDict
INPUT_FILE = os.path.join(globalVar.DATA_OUT_FOLDER, globalVar.OUTPUT_FILE_NAME)
ifile = open(INPUT_FILE, "r", encoding='utf-8')
print("Reading file: %s" % (INPUT_FILE))
paperUtils.openFileToDict(ifile, papersDict)
ifile.close()
print("Loaded %d docuemnts" % (len(papersDict)))
# Find the number of total papers per year
count = 1
for paper in papersDict:
# print("%d, %s" % (count, paper["title"]))
# count += 1
if paper["eid"] in citesDict.keys():
if citesDict[paper["eid"]] == False:
print("Added paper(%s): %s" % (paper["eid"], paper["title"]))
papersToBib.append(paper)
citesDict[paper["eid"]] = True
OUT_FILE = os.path.join(globalVar.LATEX_EXAMPLE_FOLDER, globalVar.OUTPUT_FILE_BIB)
ofile = open(OUT_FILE, 'w', encoding='utf-8')
for paper in papersToBib:
authorsNames = paper["authorFull"]
if paper["dataBase"] == "Scopus":
authorsNames = authorsNames.replace(",", ";")
authorsNames = authorsNames.split(";")
authorsNames = [x.strip() for x in authorsNames]
authorsNames = [x.replace(" ", ", ", 1) for x in authorsNames]
authorsNames = " and ".join(authorsNames)
if paper["dataBase"] == "WoS":
authorsNames = authorsNames.replace("; ", " and ")
# Preprocess fields
paper["title"] = unidecode.unidecode(paper["title"])
paper["title"] = paper["title"].replace("&", "\&").replace("_", "\_")
paper["title"] = paper["title"].replace('"', '``', 1).replace('"', "''")
paper["sourceTitle"] = unidecode.unidecode(paper["sourceTitle"])
paper["sourceTitle"] = paper["sourceTitle"].replace("&", "\&").replace("_", "\_")
paper["pageCount"] = paper["pageCount"].replace("&", "\&").replace("_", "\_")
paper["publisher"] = paper["publisher"].replace("&", "\&").replace("_", "\_")
paper["publisherAddress"] = paper["publisherAddress"].replace("&", "\&").replace("_", "\_")
paper["conferenceTitle"] = paper["conferenceTitle"].replace("&", "\&").replace("_", "\_")
paper["conferenceLocation"] = paper["conferenceLocation"].replace("&", "\&").replace("_", "\_")
paper["conferenceDate"] = paper["conferenceDate"].replace("&", "\&").replace("_", "\_")
if (paper["documentType"].split(";")[0] in ["Article", "Review", "Article in Press"]):
ofile.write('@Article{%s,\n' % paper["eid"])
ofile.write(' Author \t=\t"%s",\n' % authorsNames)
ofile.write(' Title\t\t=\t"%s",\n' % paper["title"])
ofile.write(' Journal \t=\t"%s",\n' % paper["sourceTitle"])
if paper["pageCount"]:
ofile.write(' Numpages\t=\t"%s",\n' % paper["pageCount"])
if paper["pageSart"] and paper["pageEnd"]:
ofile.write(' Pages \t=\t"%s-%s",\n' % (paper["pageSart"], paper["pageEnd"]))
if paper["volume"]:
ofile.write(' Volume \t=\t"%s",\n' % paper["volume"])
if paper["artNo"]:
ofile.write(' Article-Number \t=\t"%s",\n' % paper["artNo"])
ofile.write(' Year \t\t=\t"%s",\n' % paper["year"])
if paper["issn"]:
ofile.write(' ISSN \t\t=\t"%s",\n' % paper["issn"])
if paper["isbn"]:
ofile.write(' ISBN \t\t=\t"%s",\n' % paper["isbn"])
if paper["doi"]:
ofile.write(' DOI \t\t=\t"%s",\n' % paper["doi"])
ofile.write('}\n\n\n')
if (paper["documentType"].split(";")[0] in ["Conference Paper", "Proceedings Paper", ]):
ofile.write('@Inproceedings{%s,\n' % paper["eid"])
ofile.write(' Author \t=\t"%s",\n' % authorsNames)
ofile.write(' Title\t\t=\t"%s",\n' % paper["title"])
if paper["publisher"]:
ofile.write(' Publisher \t=\t"%s",\n' % paper["publisher"])
if paper["publisherAddress"]:
ofile.write(' Numpages\t=\t"%s",\n' % paper["publisherAddress"])
if paper["conferenceTitle"] and paper["conferenceLocation"] and paper["conferenceDate"]:
ofile.write(' Note\t\t=\t"In Proceedings of the %s, %s, %s",\n' %
(paper["conferenceTitle"], paper["conferenceLocation"], paper["conferenceDate"]))
elif paper["conferenceTitle"] and paper["conferenceDate"]:
ofile.write(' Note\t\t=\t"In {Proceedings of the } %s, %s",\n' %
(paper["conferenceTitle"], paper["conferenceDate"]))
if paper["pageCount"]:
ofile.write(' Address\t=\t"%s",\n' % paper["pageCount"])
if paper["pageSart"] and paper["pageEnd"]:
ofile.write(' Pages \t=\t"%s-%s",\n' % (paper["pageSart"], paper["pageEnd"]))
if paper["volume"]:
ofile.write(' Volume \t=\t"%s",\n' % paper["volume"])
if paper["artNo"]:
ofile.write(' Article-Number \t=\t"%s",\n' % paper["artNo"])
ofile.write(' Year \t\t=\t"%s",\n' % paper["year"])
if paper["issn"]:
ofile.write(' ISSN \t\t=\t"%s",\n' % paper["issn"])
if paper["isbn"]:
ofile.write(' ISBN \t\t=\t"%s",\n' % paper["isbn"])
if paper["doi"]:
ofile.write(' DOI \t\t=\t"%s",\n' % paper["doi"])
ofile.write('}\n\n\n')
print("\nFinished, total references generated: %d\n" % len(papersToBib))
ofile.close()
return OUT_FILE
if __name__ == '__main__':
filename = sys.argv[1]
generateBibtex(filename)