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Error in loading SQM - version conflict #885

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Whitehouse2610 opened this issue Aug 23, 2024 · 4 comments
Closed

Error in loading SQM - version conflict #885

Whitehouse2610 opened this issue Aug 23, 2024 · 4 comments

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@Whitehouse2610
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I am having the following error in a newly created SQM_output file using SqueezeMeta 1.6.5. The current version of SQMtools I am using is v1.6.3.

trail_01 = loadSQM('R_data/project_data')
Generating tabular outputs for project in R_data/project_data
Error in loadSQM("R_data/project_data") :
An error occurred while running sqm2tables.py
In addition: Warning message:
In loadSQM("R_data/project_data") :
Your project was created with SqueezeMeta v1.6.5, while this is SQMtools v1.6.3. You can ignore this message if things are working fine for you, but if you experience any issue consider using the right version of SQMtools for this project

I look forward to hearing back. @dutchscientist

@dutchscientist
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To add to this (I am supporting Whitehouse2610), we don't see any download location for SQMtools 1.6.5. As we are just starting to run a significant number of samples for a project, it is important to know whether we can run them on SqueezeMeta 1.6.5 or have to revert to 1.6.3 because of the downstream analysis compatibility. Thanks :)

@Whitehouse2610 Whitehouse2610 changed the title Error in loading SQM Error in loading SQM - version conflict Aug 23, 2024
@fpusan
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fpusan commented Aug 23, 2024

SQMtools 1.6.3 is the latest version of SQMtools, 1.6.4 and 1.6.5 were quick bugfixes in SqueezeMeta so I didn't release a new SQMtools version.
About the error you are getting, probably you ran the project in a different computer and then moved it to the computer with SQMtools.
You can run sqm2tables.py project_path project_path/results/tables in the original computer prior to copying the project (or just run sqm2zip.py, in a few cases this will run you into #755 but there's an easy workaround)

@dutchscientist
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dutchscientist commented Aug 23, 2024

Thank you. We indeed run SqueezeMeta on our more powerful computers, and users then analyse on their own computer. We'll try this out :)

basically we run it on the server, do sqm2zip.py and provide the ZIP file to the end-user.

@fpusan
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fpusan commented Aug 28, 2024

That should work! Closing this for now, let me know if you run into other issues

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