fix in n iter reinflat logic #2177
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name: pestpp continuous integration | |
on: | |
schedule: | |
- cron: '0 8 * * *' # run at 8 AM UTC (12 am PST) | |
push: | |
pull_request: | |
jobs: | |
pestppCI: | |
name: benchmarks | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [windows-latest, ubuntu-latest] | |
python-version: [3.10] # , 3.7, 3.6] | |
run-type: [std] | |
# test_repo: [""] | |
# test_dir: [""] | |
# test_script: [""] | |
# include: | |
# - test_script: opt_test.py | |
# - test_repo: "https://github.com/pestpp/pestpp-opt_benchmarks" | |
# - test_dir: "pestpp-opt_benchmarks" | |
env: | |
- { test_dir: "benchmarks", test_repo: "https://github.com/usgs/pestpp", test_script: "basic_tests.py"} | |
- { test_dir: "pestpp-opt_benchmarks", test_repo: "https://github.com/pestpp/pestpp-opt_benchmarks", test_script: "opt_test.py"} | |
- { test_dir: "pestpp-ies_benchmarks", test_repo: "https://github.com/pestpp/pestpp-ies_benchmarks", test_script: "ies_test_base.py"} | |
- { test_dir: "pestpp-ies_benchmarks", test_repo: "https://github.com/pestpp/pestpp-ies_benchmarks", test_script: "ies_test_part1.py"} | |
- { test_dir: "pestpp-ies_benchmarks", test_repo: "https://github.com/pestpp/pestpp-ies_benchmarks", test_script: "ies_test_part2.py"} | |
- { test_dir: "pestpp-ies_benchmarks", test_repo: "https://github.com/pestpp/pestpp-ies_benchmarks", test_script: "ies_test_part3.py"} | |
- { test_dir: "pestpp-ies_benchmarks", test_repo: "https://github.com/pestpp/pestpp-ies_benchmarks", test_script: "ies_test_part4.py"} | |
- { test_dir: "pestpp-glm_benchmarks", test_repo: "https://github.com/pestpp/pestpp-glm_benchmarks", test_script: "glm_test_base.py"} | |
- { test_dir: "pestpp-mou_benchmarks", test_repo: "https://github.com/pestpp/pestpp-mou_benchmarks", test_script: "mou_tests.py"} | |
#- { test_dir: "pestpp-mou_benchmarks", test_repo: "https://github.com/pestpp/pestpp-mou_benchmarks", test_script: "mou_tests_2.py"} | |
- { test_dir: "pestpp-mou_benchmarks", test_repo: "https://github.com/pestpp/pestpp-mou_benchmarks", test_script: "henry_test.py"} | |
- { test_dir: "pestpp-da_benchmarks", test_repo: "https://github.com/pestpp/pestpp-da_benchmarks", test_script: "da_tests.py"} | |
- { test_dir: "pestpp-da_benchmarks", test_repo: "https://github.com/pestpp/pestpp-da_benchmarks", test_script: "lorenz96_tests.py"} | |
- { test_dir: "pestpp-sqp_benchmarks", test_repo: "https://github.com/pestpp/pestpp-sqp_benchmarks", test_script: "sqp_tests.py"} | |
include: | |
- os: ubuntu-latest | |
env: { test_dir: "pestpp-mou_benchmarks", test_repo: "https://github.com/pestpp/pestpp-mou_benchmarks", test_script: "mou_tests_2.py"} | |
env: ${{ matrix.env }} | |
steps: | |
- uses: actions/checkout@v4 | |
# - name: Setup Ninja | |
# if: ${{ runner.os == 'Windows' }} | |
- uses: seanmiddleditch/gha-setup-ninja@master | |
# - name: Cache Miniconda | |
# uses: actions/[email protected] | |
# env: | |
# # Increase this value to reset cache if environment.yml has changed | |
# CACHE_NUMBER: 0 | |
# with: | |
# path: ~/conda_pkgs_dir | |
# key: ${{ runner.os }}-${{ matrix.python-version }}-${{ matrix.run-type }}-${{ env.CACHE_NUMBER }}-${{ hashFiles('etc/environment.yml') }} | |
- name: Set Windows ENV | |
if: runner.os == 'Windows' | |
uses: ilammy/msvc-dev-cmd@v1 | |
# Standard python fails on windows without GDAL installation | |
# Using custom bash shell ("shell: bash -l {0}") with Miniconda | |
# - name: Setup Miniconda | |
# uses: conda-incubator/setup-miniconda@v2 | |
# with: | |
# # python-version: ${{ matrix.python-version }} | |
# # #mamba-version: "0.20.0" | |
# # channels: conda-forge | |
# # auto-update-conda: true | |
# # activate-environment: pyemu | |
# # use-only-tar-bz2: true | |
# miniforge-version: latest | |
# # miniconda-version: "latest" | |
# python-version: ${{ matrix.python-version }} | |
# # mamba-version: "*" | |
# # channels: conda-forge | |
# miniforge-variant: Mambaforge | |
# # auto-update-conda: true | |
# activate-environment: pyemu | |
# use-mamba: true | |
# # environment-file: etc/environment.yml | |
# # use-only-tar-bz2: true | |
- name: setup micromamba | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
micromamba-version: '1.3.1-0' | |
environment-file: etc/environment.yml | |
init-shell: >- | |
bash | |
powershell | |
cache-environment: true | |
post-cleanup: 'all' | |
# - name: Add packages to pyemu environment using mamba or conda | |
# shell: bash -l {0} | |
# run: | | |
# if [ "$RUNNER_OS" == "Windows" ]; then | |
# conda env update --name pyemu --file etc/environment.yml | |
# else | |
# conda env update --name pyemu --file etc/environment.yml | |
# fi | |
# - name: Add packages to pyemu environment using conda | |
# if: ${{ matrix.python-version < 3.8 }} | |
# # if: ${{ runner.os == 'Windows' || matrix.python-version < 3.8 }} | |
# shell: bash -l {0} | |
# run: | | |
# conda env update --name pyemu --file etc/environment.yml | |
# - name: Add packages to pyemu environment using mamba | |
# # if: ${{ runner.os != 'Windows' && matrix.python-version >= 3.8 }} | |
# if: ${{ matrix.python-version >= 3.8 }} | |
# shell: bash -l {0} | |
# run: | | |
# mamba env update --name pyemu --file etc/environment.yml | |
# - name: Install Flopy & pyemu? | |
# shell: bash -l {0} | |
# run: | | |
# # git clone -b develop --depth 1 https://github.com/modflowpy/flopy.git | |
# # cd flopy | |
# # python setup.py install | |
# # cd .. | |
# # pip install https://github.com/modflowpy/pymake/zipball/master | |
# git clone -b develop --depth 1 https://github.com/pypest/pyemu.git | |
# cd pyemu | |
# python setup.py install | |
# cd .. | |
# - name: Get specific version CMake, v3.19 | |
# if: ${{ runner.os == 'Windows' }} | |
# uses: lukka/get-cmake@latest | |
- name: clone test repo ${{ env.test_repo }} | |
shell: bash -l {0} | |
run: | | |
git clone ${{ env.test_repo }} | |
- name: PESTPP exe install | |
shell: bash -l {0} | |
run: | | |
mkdir build && cd build | |
if [[ "$RUNNER_OS" == "Windows" ]]; then | |
cmake -GNinja -DCMAKE_CXX_COMPILER=cl -DCMAKE_C_COMPILER=cl -DCMAKE_BUILD_TYPE=Release .. | |
ninja | |
else | |
cmake -DCMAKE_BUILD_TYPE=Release .. | |
make -j2 | |
fi | |
cd .. | |
- name: aux bin path hackery | |
shell: bash -l {0} | |
run: | | |
cp -r benchmarks/test_bin/win $HOME/bin | |
echo "../../test_bin/win" >> $GITHUB_PATH | |
if [[ "$RUNNER_OS" == "Windows" ]]; then | |
cp -r benchmarks/test_bin/win $HOME/bin | |
echo "../../test_bin/win" >> $GITHUB_PATH | |
else | |
echo "../../test_bin/linux" >> $GITHUB_PATH | |
cp -r benchmarks/test_bin/win $HOME/bin | |
fi | |
echo "$HOME/.local/bin" >> $GITHUB_PATH | |
- name: run test script ${{ env.test_script }} in ${{ env.test_dir }} | |
shell: bash -l {0} | |
run: | | |
ls -l | |
cd ${{ env.test_dir }} | |
nosetests -v ${{ env.test_script }} | |
status=$? | |
echo $status | |
if [ $status -eq 0 ]; then | |
exit 0 | |
else | |
exit 127 | |
fi | |