ci.yml

name: pestpp continuous integration

on: 
  schedule:
    - cron: '0 8 * * *' # run at 8 AM UTC (12 am PST)
  push:
  pull_request:

jobs:
  pestppCI:
    name: benchmarks
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [windows-latest, ubuntu-latest] 
        python-version: [3.10] # , 3.7, 3.6]
        run-type: [std]
        # test_repo: [""]
        # test_dir: [""]
        # test_script: [""]
        # include:
        #   - test_script: opt_test.py
        #   - test_repo: "https://github.com/pestpp/pestpp-opt_benchmarks"
        #   - test_dir: "pestpp-opt_benchmarks"
        
        env:
          - { test_dir: "benchmarks", test_repo: "https://github.com/usgs/pestpp", test_script: "basic_tests.py"}
          - { test_dir: "pestpp-opt_benchmarks", test_repo: "https://github.com/pestpp/pestpp-opt_benchmarks", test_script: "opt_test.py"}
          - { test_dir: "pestpp-ies_benchmarks", test_repo: "https://github.com/pestpp/pestpp-ies_benchmarks", test_script: "ies_test_base.py"}
          - { test_dir: "pestpp-ies_benchmarks", test_repo: "https://github.com/pestpp/pestpp-ies_benchmarks", test_script: "ies_test_part1.py"}
          - { test_dir: "pestpp-ies_benchmarks", test_repo: "https://github.com/pestpp/pestpp-ies_benchmarks", test_script: "ies_test_part2.py"}
          - { test_dir: "pestpp-ies_benchmarks", test_repo: "https://github.com/pestpp/pestpp-ies_benchmarks", test_script: "ies_test_part3.py"}
          - { test_dir: "pestpp-ies_benchmarks", test_repo: "https://github.com/pestpp/pestpp-ies_benchmarks", test_script: "ies_test_part4.py"}
          - { test_dir: "pestpp-glm_benchmarks", test_repo: "https://github.com/pestpp/pestpp-glm_benchmarks", test_script: "glm_test_base.py"}
          - { test_dir: "pestpp-mou_benchmarks", test_repo: "https://github.com/pestpp/pestpp-mou_benchmarks", test_script: "mou_tests.py"}
          #- { test_dir: "pestpp-mou_benchmarks", test_repo: "https://github.com/pestpp/pestpp-mou_benchmarks", test_script: "mou_tests_2.py"}
          - { test_dir: "pestpp-mou_benchmarks", test_repo: "https://github.com/pestpp/pestpp-mou_benchmarks", test_script: "henry_test.py"}
          - { test_dir: "pestpp-da_benchmarks", test_repo: "https://github.com/pestpp/pestpp-da_benchmarks", test_script: "da_tests.py"}
          - { test_dir: "pestpp-da_benchmarks", test_repo: "https://github.com/pestpp/pestpp-da_benchmarks", test_script: "lorenz96_tests.py"}
          - { test_dir: "pestpp-sqp_benchmarks", test_repo: "https://github.com/pestpp/pestpp-sqp_benchmarks", test_script: "sqp_tests.py"}
        include: 
            - os: ubuntu-latest
              env: { test_dir: "pestpp-mou_benchmarks", test_repo: "https://github.com/pestpp/pestpp-mou_benchmarks", test_script: "mou_tests_2.py"}
    env: ${{ matrix.env }}

    steps:

    - uses:  actions/checkout@v4
    # - name: Setup Ninja
      # if: ${{ runner.os == 'Windows' }} 
    - uses: seanmiddleditch/gha-setup-ninja@master
  
    # - name: Cache Miniconda
    #   uses: actions/cache@v2.1.0
    #   env:
    #     # Increase this value to reset cache if environment.yml has changed
    #     CACHE_NUMBER: 0
    #   with:
    #     path: ~/conda_pkgs_dir
    #     key: ${{ runner.os }}-${{ matrix.python-version }}-${{ matrix.run-type }}-${{ env.CACHE_NUMBER }}-${{ hashFiles('etc/environment.yml') }}
    
    - name: Set Windows ENV
      if: runner.os == 'Windows'
      uses: ilammy/msvc-dev-cmd@v1

    

    # Standard python fails on windows without GDAL installation
    # Using custom bash shell ("shell: bash -l {0}") with Miniconda
    # - name: Setup Miniconda
    #   uses: conda-incubator/setup-miniconda@v2
    #   with:
    #     # python-version: ${{ matrix.python-version }}
    #     # #mamba-version: "0.20.0"
    #     # channels: conda-forge
    #     # auto-update-conda: true
    #     # activate-environment: pyemu
    #     # use-only-tar-bz2: true
    #     miniforge-version: latest
    #     # miniconda-version: "latest"
    #     python-version: ${{ matrix.python-version }}
    #     # mamba-version: "*"
    #     # channels: conda-forge
    #     miniforge-variant: Mambaforge
    #     # auto-update-conda: true
    #     activate-environment: pyemu
    #     use-mamba: true
    #     # environment-file: etc/environment.yml
    #     # use-only-tar-bz2: true

    - name: setup micromamba
      uses: mamba-org/setup-micromamba@v1
      with:
        micromamba-version: '1.3.1-0'
        environment-file: etc/environment.yml
        init-shell: >-
          bash
          powershell
        cache-environment: true
        post-cleanup: 'all'

    # - name: Add packages to pyemu environment using mamba or conda
    #   shell: bash -l {0}
    #   run: |
    #     if [ "$RUNNER_OS" == "Windows" ]; then
    #       conda env update --name pyemu --file etc/environment.yml
    #     else
    #       conda env update --name pyemu --file etc/environment.yml
    #     fi

    # - name: Add packages to pyemu environment using conda
    #   if: ${{ matrix.python-version < 3.8 }}
    #   # if: ${{ runner.os == 'Windows' || matrix.python-version < 3.8 }}
    #   shell: bash -l {0}
    #   run: |
    #       conda env update --name pyemu --file etc/environment.yml
    
    # - name: Add packages to pyemu environment using mamba
    #   # if: ${{ runner.os != 'Windows' && matrix.python-version >= 3.8 }}
    #   if: ${{ matrix.python-version >= 3.8 }}
    #   shell: bash -l {0}
    #   run: |
    #       mamba env update --name pyemu --file etc/environment.yml
    
    # - name: Install Flopy & pyemu?
    #   shell: bash -l {0}
    #   run: |
    #     # git clone -b develop --depth 1 https://github.com/modflowpy/flopy.git
    #     # cd flopy
    #     # python setup.py install
    #     # cd ..
    #     # pip install https://github.com/modflowpy/pymake/zipball/master
    #     git clone -b develop --depth 1 https://github.com/pypest/pyemu.git
    #     cd pyemu
    #     python setup.py install
    #     cd ..

    # - name: Get specific version CMake, v3.19
    #   if: ${{ runner.os == 'Windows' }} 
    #   uses: lukka/get-cmake@latest

    - name: clone test repo ${{ env.test_repo }}
      shell: bash -l {0}
      run: |
        git clone ${{ env.test_repo }}

    - name: PESTPP exe install
      shell: bash -l {0}
      run: |
        mkdir build && cd build
        if [[ "$RUNNER_OS" == "Windows" ]]; then
            cmake -GNinja -DCMAKE_CXX_COMPILER=cl -DCMAKE_C_COMPILER=cl -DCMAKE_BUILD_TYPE=Release ..
            ninja
        else
            cmake -DCMAKE_BUILD_TYPE=Release ..
            make -j2
        fi
        cd ..

    
    - name: aux bin path hackery
      shell: bash -l {0}
      run: |
        cp -r benchmarks/test_bin/win $HOME/bin
        echo "../../test_bin/win" >> $GITHUB_PATH
        if [[ "$RUNNER_OS" == "Windows" ]]; then
            cp -r benchmarks/test_bin/win $HOME/bin
            echo "../../test_bin/win" >> $GITHUB_PATH  
        else
            echo "../../test_bin/linux" >> $GITHUB_PATH
            cp -r benchmarks/test_bin/win $HOME/bin
        fi
        echo "$HOME/.local/bin" >> $GITHUB_PATH

    - name: run test script ${{ env.test_script }} in ${{ env.test_dir }}
      shell: bash -l {0}
      run: |
        
        ls -l
        cd ${{ env.test_dir }}
        nosetests -v ${{ env.test_script }}
        cd