remove Zenodo sandbox token -- not currently integrated #37
build.yml
on: push
Build the article PDF
1m 40s
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1 error and 3 warnings
Build the article PDF
exec: Your conda installation is not configured to use strict channel priorities. This is however crucial for having robust and correct environments (for details, see https://conda-forge.org/docs/user/tipsandtricks.html). Please consider to configure strict priorities by executing 'conda config --set channel_priority strict'.
Fetching Overleaf repo...
Pulling changes from Overleaf: src/tex/ms.tex src/tex/bib.bib
Preprocess: Setting up...
Preprocess: Generating XML tree...
warning: ms.tex:55: Overfull /hbox (10.882pt too wide) in paragraph at lines 55--55
warning: ms.tex:141: Underfull /hbox (badness 1577) in paragraph at lines 139--141
warning: ms.tex:141: Underfull /hbox (badness 4765) in paragraph at lines 139--141
warning: ms.tex:141: Underfull /hbox (badness 1558) in paragraph at lines 139--141
warning: ms.tex:147: Underfull /hbox (badness 10000) in paragraph at lines 146--147
warning: warnings were issued by the TeX engine; use --print and/or --keep-logs for details.
Preprocess: Setting up the workflow...
Traceback (most recent call last):
File "/home/runner/work/ebtel_abundances/ebtel_abundances/.snakemake/scripts/tmpu7pi_nat.preprocess.py", line 484, in <module>
config["tree"] = get_json_tree(snakemake.input[0])
File "/home/runner/work/ebtel_abundances/ebtel_abundances/.snakemake/scripts/tmpu7pi_nat.preprocess.py", line 409, in get_json_tree
free_floating_graphics = [
File "/home/runner/work/ebtel_abundances/ebtel_abundances/.snakemake/scripts/tmpu7pi_nat.preprocess.py", line 412, in <listcomp>
if graphic not in config["tex_files_out"]
KeyError: 'tex_files_out'
Error in rule syw__preprocess:
jobid: 1
output: .showyourwork/config.json
RuleException:
CalledProcessErrorin line 98 of /opt/hostedtoolcache/Python/3.10.14/x64/lib/python3.10/site-packages/showyourwork/workflow/rules/preprocess.smk:
Command 'set -euo pipefail; /opt/hostedtoolcache/Python/3.10.14/x64/bin/python /home/runner/work/ebtel_abundances/ebtel_abundances/.snakemake/scripts/tmpu7pi_nat.preprocess.py' returned non-zero exit status 1.
File "/opt/hostedtoolcache/Python/3.10.14/x64/lib/python3.10/site-packages/showyourwork/workflow/rules/preprocess.smk", line 98, in __rule_4
File "/opt/hostedtoolcache/Python/3.10.14/x64/lib/python3.10/concurrent/futures/thread.py", line 58, in run
Exiting because a job execution failed. Look above for error message
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Deprecation notice: v1, v2, and v3 of the artifact actions
The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "showyourwork-logs".
Please update your workflow to use v4 of the artifact actions.
Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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Build the article PDF
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-python@v4, showyourwork/showyourwork-action@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Build the article PDF
The following actions uses node12 which is deprecated and will be forced to run on node16: showyourwork/showyourwork-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Artifacts
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showyourwork-logs
Expired
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24 MB |
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