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HHblits query running time is too long! #71

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JLHU2021 opened this issue Jan 25, 2024 · 0 comments
Open

HHblits query running time is too long! #71

JLHU2021 opened this issue Jan 25, 2024 · 0 comments

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@JLHU2021
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Hello! I am running the alphafold2 (non-docker version; Miniconda) in a HPC platform (with Nvidia GPUs), predicting the structure of a protein with about 500 amino acid residues. I am sure that the hardwares is OK, including the CPU and disks. But it has been running for over 23 hours，and haven't finished the "Started HHblits query" step after staying in this step for 22 hours. Could anyone help me with this issue?! Many thanks!!!
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