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environment.yml
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environment.yml
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name: foundations
channels:
- pytorch
- nvidia
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- blas=1.0=mkl
- brotli-python=1.0.9=py39h6a678d5_8
- bzip2=1.0.8=h5eee18b_6
- ca-certificates=2024.3.11=h06a4308_0
- cccl=2.3.2=h2c7f797_0
- certifi=2024.6.2=py39h06a4308_0
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- cuda=11.8.0=0
- cuda-cccl=12.4.127=h06a4308_2
- cuda-cccl_linux-64=12.4.127=h06a4308_2
- cuda-command-line-tools=11.8.0=0
- cuda-compiler=12.5.0=0
- cuda-cudart=11.8.89=0
- cuda-cudart-dev=11.8.89=0
- cuda-cuobjdump=12.4.127=h6a678d5_1
- cuda-cupti=11.8.87=0
- cuda-cuxxfilt=12.4.127=h6a678d5_1
- cuda-demo-suite=12.4.127=0
- cuda-documentation=12.4.127=0
- cuda-driver-dev=12.4.127=h99ab3db_0
- cuda-driver-dev_linux-64=12.4.127=hd681fbe_0
- cuda-gdb=12.4.127=h122497a_1
- cuda-libraries=11.8.0=0
- cuda-libraries-dev=12.5.0=0
- cuda-memcheck=11.8.86=0
- cuda-nsight=12.4.127=h06a4308_1
- cuda-nvcc=12.4.131=0
- cuda-nvdisasm=12.4.127=h6a678d5_1
- cuda-nvml-dev=12.4.127=h6a678d5_1
- cuda-nvprof=12.4.127=h6a678d5_1
- cuda-nvprune=12.4.127=h6a678d5_1
- cuda-nvrtc=11.8.89=0
- cuda-nvrtc-dev=11.8.89=0
- cuda-nvtx=11.8.86=0
- cuda-nvvp=12.4.127=h6a678d5_1
- cuda-opencl=12.4.127=h6a678d5_0
- cuda-opencl-dev=12.4.127=h6a678d5_0
- cuda-profiler-api=12.4.127=h06a4308_1
- cuda-runtime=11.8.0=0
- cuda-sanitizer-api=12.4.127=h99ab3db_1
- cuda-toolkit=11.8.0=0
- cuda-tools=11.8.0=0
- cuda-version=12.4=hbda6634_3
- cuda-visual-tools=12.5.0=0
- dbus=1.13.18=hb2f20db_0
- expat=2.6.2=h6a678d5_0
- ffmpeg=4.2.2=h20bf706_0
- filelock=3.13.1=py39h06a4308_0
- fontconfig=2.14.1=h4c34cd2_2
- freetype=2.12.1=h4a9f257_0
- gds-tools=1.9.1.3=h99ab3db_1
- glib=2.78.4=h6a678d5_0
- glib-tools=2.78.4=h6a678d5_0
- gmp=6.2.1=h295c915_3
- gmpy2=2.1.2=py39heeb90bb_0
- gnutls=3.6.15=he1e5248_0
- icu=73.1=h6a678d5_0
- idna=3.7=py39h06a4308_0
- intel-openmp=2023.1.0=hdb19cb5_46306
- jinja2=3.1.4=py39h06a4308_0
- jpeg=9e=h5eee18b_1
- krb5=1.20.1=h143b758_1
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libcublas=11.11.3.6=0
- libcublas-dev=11.11.3.6=0
- libcufft=10.9.0.58=0
- libcufft-dev=10.9.0.58=0
- libcufile=1.9.1.3=h99ab3db_1
- libcufile-dev=1.9.1.3=h99ab3db_1
- libcurand=10.3.5.147=h99ab3db_1
- libcurand-dev=10.3.5.147=h99ab3db_1
- libcusolver=11.4.1.48=0
- libcusolver-dev=11.4.1.48=0
- libcusparse=11.7.5.86=0
- libcusparse-dev=11.7.5.86=0
- libdeflate=1.17=h5eee18b_1
- libedit=3.1.20230828=h5eee18b_0
- libffi=3.4.4=h6a678d5_1
- libgcc-ng=11.2.0=h1234567_1
- libglib=2.78.4=hdc74915_0
- libgomp=11.2.0=h1234567_1
- libiconv=1.16=h5eee18b_3
- libidn2=2.3.4=h5eee18b_0
- libnpp=11.8.0.86=0
- libnpp-dev=11.8.0.86=0
- libnvfatbin=12.4.127=h7934f7d_2
- libnvfatbin-dev=12.4.127=h7934f7d_2
- libnvjitlink=12.4.127=h99ab3db_1
- libnvjitlink-dev=12.4.127=h99ab3db_1
- libnvjpeg=11.9.0.86=0
- libnvjpeg-dev=11.9.0.86=0
- libopus=1.3.1=h7b6447c_0
- libpng=1.6.39=h5eee18b_0
- libstdcxx-ng=11.2.0=h1234567_1
- libtasn1=4.19.0=h5eee18b_0
- libtiff=4.5.1=h6a678d5_0
- libunistring=0.9.10=h27cfd23_0
- libuuid=1.41.5=h5eee18b_0
- libvpx=1.7.0=h439df22_0
- libwebp-base=1.3.2=h5eee18b_0
- libxcb=1.15=h7f8727e_0
- libxkbcommon=1.0.1=h5eee18b_1
- libxml2=2.10.4=hfdd30dd_2
- lz4-c=1.9.4=h6a678d5_1
- markupsafe=2.1.3=py39h5eee18b_0
- mkl=2023.1.0=h213fc3f_46344
- mkl-service=2.4.0=py39h5eee18b_1
- mkl_fft=1.3.8=py39h5eee18b_0
- mkl_random=1.2.4=py39hdb19cb5_0
- mpc=1.1.0=h10f8cd9_1
- mpfr=4.0.2=hb69a4c5_1
- mpmath=1.3.0=py39h06a4308_0
- ncurses=6.4=h6a678d5_0
- nettle=3.7.3=hbbd107a_1
- networkx=3.2.1=py39h06a4308_0
- nsight-compute=2024.1.1.4=h968f9c8_2
- nspr=4.35=h6a678d5_0
- nss=3.89.1=h6a678d5_0
- numpy=1.26.4=py39h5f9d8c6_0
- numpy-base=1.26.4=py39hb5e798b_0
- ocl-icd=2.3.2=h5eee18b_1
- openh264=2.1.1=h4ff587b_0
- openjpeg=2.4.0=h3ad879b_0
- openssl=3.0.14=h5eee18b_0
- packaging=23.2=py39h06a4308_0
- pcre2=10.42=hebb0a14_1
- pillow=10.3.0=py39h5eee18b_0
- pysocks=1.7.1=py39h06a4308_0
- python=3.9.19=h955ad1f_1
- pytorch-cuda=11.8=h7e8668a_5
- pytorch-mutex=1.0=cuda
- readline=8.2=h5eee18b_0
- requests=2.32.2=py39h06a4308_0
- setuptools=69.5.1=py39h06a4308_0
- sqlite=3.45.3=h5eee18b_0
- sympy=1.12=py39h06a4308_0
- tbb=2021.8.0=hdb19cb5_0
- tk=8.6.14=h39e8969_0
- torchaudio=2.0.0=py39_cu118
- typing_extensions=4.11.0=py39h06a4308_0
- tzdata=2024a=h04d1e81_0
- urllib3=2.2.2=py39h06a4308_0
- wheel=0.43.0=py39h06a4308_0
- x264=1!157.20191217=h7b6447c_0
- xz=5.4.6=h5eee18b_1
- zlib=1.2.13=h5eee18b_1
- zstd=1.5.5=hc292b87_2
- pip:
- absl-py==2.1.0
- antlr4-python3-runtime==4.9.3
- autograd==1.6.2
- autograd-gamma==0.5.0
- braceexpand==0.1.7
- docopt==0.6.2
- ecos==2.0.14
- einops==0.8.0
- fairscale==0.4.13
- flash-attn==2.5.8
- formulaic==1.0.1
- fsspec==2024.6.1
- future==1.0.0
- fvcore==0.1.5.post20221221
- gigapath==0.1.0
- grpcio==1.64.1
- h5py==3.11.0
- huggingface-hub==0.20.2
- imageio==2.34.2
- interface-meta==1.3.0
- iopath==0.1.10
- ipython==8.12.3
- lazy-loader==0.4
- lifelines==0.29.0
- markdown==3.6
- matplotlib==3.9.0
- mypy-extensions==1.0.0
- nbconvert==7.16.4
- ninja==1.11.1.1
- numexpr==2.10.1
- nvidia-cublas-cu12==12.1.3.1
- nvidia-cuda-cupti-cu12==12.1.105
- nvidia-cuda-nvrtc-cu12==12.1.105
- nvidia-cuda-runtime-cu12==12.1.105
- nvidia-cudnn-cu12==8.9.2.26
- nvidia-cufft-cu12==11.0.2.54
- nvidia-curand-cu12==10.3.2.106
- nvidia-cusolver-cu12==11.4.5.107
- nvidia-cusparse-cu12==12.1.0.106
- nvidia-nccl-cu12==2.20.5
- nvidia-nvjitlink-cu12==12.5.82
- nvidia-nvtx-cu12==12.1.105
- omegaconf==2.3.0
- opencv-python==4.5.5.64
- openslide-python==1.3.1
- osqp==0.6.7.post0
- pandas==2.2.2
- pip==24.1.1
- pipreqs==0.5.0
- portalocker==2.10.0
- pyre-extensions==0.0.23
- qdldl==0.1.7.post4
- regex==2024.5.15
- safetensors==0.4.3
- scikit-image==0.24.0
- scikit-learn==1.5.0
- scikit-survival==0.23.0
- scipy==1.13.1
- simpleitk==2.3.1
- six==1.16.0
- tabulate==0.9.0
- tensorboard==2.17.0
- tensorboard-data-server==0.7.2
- termcolor==2.4.0
- timm==0.9.8
- tokenizers==0.15.2
- torch==2.3.0
- torchmetrics==0.10.3
- torchvision==0.18.0
- tqdm==4.66.4
- transformers==4.36.2
- triton==2.3.0
- typing-extensions==4.12.2
- typing-inspect==0.9.0
- wandb==0.17.3
- webdataset==0.2.86
- werkzeug==3.0.3
- wrapt==1.16.0
- xformers==0.0.26.post1
- yacs==0.1.8
- yarg==0.1.9