dante_gff_to_tabular.xml

<tool id="gff_to_tabular" name="Convert dante gff3 to tab delimited file" version="0.1.0" python_template_version="3.5">
    <requirements>
        <requirement type="package">R</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        Rscript ${__tool_directory__}/summarize_gff.R '$inputgff' '$output'
    ]]></command>
    <inputs>
      <param type="data" name="inputgff" format="gff3" />
    </inputs>
    <outputs>
        <data name="output" format="tabular" />
    </outputs>
    <help><![CDATA[
        TODO: Fill in help.
    ]]></help>
</tool>