From 8db0345454040abbd817e7add4f276bf1d298cb2 Mon Sep 17 00:00:00 2001 From: Tianhao-Gu Date: Thu, 4 Apr 2024 13:30:56 -0500 Subject: [PATCH 1/2] bump deps ver --- Pipfile | 16 +- Pipfile.lock | 854 +++++++++++++++++++++++++++------------------------ 2 files changed, 454 insertions(+), 416 deletions(-) diff --git a/Pipfile b/Pipfile index 6fcb5c02..7403ca4e 100644 --- a/Pipfile +++ b/Pipfile @@ -5,7 +5,7 @@ name = "pypi" [packages] fastapi = "==0.110.0" -uvicorn = {version = "==0.27.1", extras = ["standard"]} +uvicorn = {version = "==0.29.0", extras = ["standard"]} jsonlines = "==4.0.0" cacheout = "==0.16.0" aiohttp = "==3.9.3" @@ -17,7 +17,7 @@ beautifulsoup4 = "==4.12.3" jsonschema = "==4.21.1" apscheduler = "==3.10.4" file-read-backwards = "==3.0.0" -aiodns = "==3.1.1" +aiodns = "==3.2.0" docker = "==7.0.0" click = "==8.1.7" PyYAML = "==6.0.1" @@ -33,13 +33,13 @@ requests-toolbelt = "==1.0.0" # I'm guessing one of the pytest-*s has a requirement of <8 # but haven't checked pytest = "==7.4.4" -coverage = "==7.4.3" -pytest-cov = "==4.1.0" -ipython = "==8.22.1" -pytest-asyncio = "==0.23.5" +coverage = "==7.4.4" +pytest-cov = "==5.0.0" +ipython = "==8.23.0" +pytest-asyncio = "==0.23.6" # currently for design/experiments/store_mongo.py -pymongo = "==4.6.2" -sourmash = "==4.8.6" +pymongo = "==4.6.3" +sourmash = "==4.8.7" prometheus-client = "==0.20.0" pyqt5 = "==5.15.10" diff --git a/Pipfile.lock b/Pipfile.lock index 3aa41a1a..d691dcb6 100644 --- a/Pipfile.lock +++ b/Pipfile.lock @@ -1,7 +1,7 @@ { "_meta": { "hash": { - "sha256": "b511b0da89021173d9271d33ccec1ceb3e76ba7abaeda6880a71c33000e71d2e" + "sha256": "7c156b66bce6623b3cf32fc71db8bb9acb6698cb9a3e1fa8873e450e8d5fb781" }, "pipfile-spec": 6, "requires": { @@ -18,11 +18,11 @@ "default": { "aiodns": { "hashes": [ - "sha256:1073eac48185f7a4150cad7f96a5192d6911f12b4fb894de80a088508c9b3a99", - "sha256:a387b63da4ced6aad35b1dda2d09620ad608a1c7c0fb71efa07ebb4cd511928d" + "sha256:62869b23409349c21b072883ec8998316b234c9a9e36675756e8e317e8768f72", + "sha256:e443c0c27b07da3174a109fd9e736d69058d808f144d3c9d56dbd1776964c5f5" ], "index": "pypi", - "version": "==3.1.1" + "version": "==3.2.0" }, "aiohttp": { "hashes": [ @@ -104,6 +104,7 @@ "sha256:ff30218887e62209942f91ac1be902cc80cddb86bf00fbc6783b7a43b2bea26f" ], "index": "pypi", + "markers": "python_version >= '3.8'", "version": "==3.9.3" }, "aiosignal": { @@ -136,6 +137,7 @@ "sha256:fb91e8a768632a4756a585f79ec834e0e27aad5860bac7eaa523d9ccefd87661" ], "index": "pypi", + "markers": "python_version >= '3.6'", "version": "==3.10.4" }, "argparse-ext": { @@ -159,6 +161,7 @@ "sha256:b80878c9f40111313e55da8ba20bdba06d8fa3969fc68304167741bbf9e082ed" ], "index": "pypi", + "markers": "python_full_version >= '3.6.0'", "version": "==4.12.3" }, "cacheout": { @@ -167,6 +170,7 @@ "sha256:ee264897cbaa089ae5f406da11952697d99fa7f3583cfab69fe8a00ff8e1952d" ], "index": "pypi", + "markers": "python_version >= '3.7'", "version": "==0.16.0" }, "certifi": { @@ -337,6 +341,7 @@ "sha256:ca9853ad459e787e2192211578cc907e7594e294c7ccc834310722b41b9ca6de" ], "index": "pypi", + "markers": "python_version >= '3.7'", "version": "==8.1.7" }, "docker": { @@ -345,6 +350,7 @@ "sha256:323736fb92cd9418fc5e7133bc953e11a9da04f4483f828b527db553f1e7e5a3" ], "index": "pypi", + "markers": "python_version >= '3.8'", "version": "==7.0.0" }, "fastapi": { @@ -353,6 +359,7 @@ "sha256:87a1f6fb632a218222c5984be540055346a8f5d8a68e8f6fb647b1dc9934de4b" ], "index": "pypi", + "markers": "python_version >= '3.8'", "version": "==0.110.0" }, "file-read-backwards": { @@ -451,6 +458,7 @@ "sha256:e9e62d3fd307ef9c52e43b33fd92759fc94c04d8b5178f85f641b183906d4353" ], "index": "pypi", + "markers": "python_version >= '3.6'", "version": "==5.1.0" }, "h11": { @@ -463,11 +471,11 @@ }, "httpcore": { "hashes": [ - "sha256:ac418c1db41bade2ad53ae2f3834a3a0f5ae76b56cf5aa497d2d033384fc7d73", - "sha256:cb2839ccfcba0d2d3c1131d3c3e26dfc327326fbe7a5dc0dbfe9f6c9151bb022" + "sha256:34a38e2f9291467ee3b44e89dd52615370e152954ba21721378a87b2960f7a61", + "sha256:421f18bac248b25d310f3cacd198d55b8e6125c107797b609ff9b7a6ba7991b5" ], "markers": "python_version >= '3.8'", - "version": "==1.0.4" + "version": "==1.0.5" }, "httptools": { "hashes": [ @@ -516,6 +524,7 @@ "sha256:a0cb88a46f32dc874e04ee956e4c2764aba2aa228f650b06788ba6bda2962ab5" ], "index": "pypi", + "markers": "python_version >= '3.8'", "version": "==0.27.0" }, "idna": { @@ -548,6 +557,7 @@ "sha256:185b334ff2ca5a91362993f42e83588a360cf95ce4b71a73548502bda52a7c55" ], "index": "pypi", + "markers": "python_version >= '3.8'", "version": "==4.0.0" }, "jsonschema": { @@ -556,6 +566,7 @@ "sha256:85727c00279f5fa6bedbe6238d2aa6403bedd8b4864ab11207d07df3cc1b2ee5" ], "index": "pypi", + "markers": "python_version >= '3.8'", "version": "==4.21.1" }, "jsonschema-default": { @@ -564,6 +575,7 @@ "sha256:c653ec0e5011fa7514f83442fba5813625c9af80cc535708d53c2eeebadf064b" ], "index": "pypi", + "markers": "python_version >= '3.10' and python_version < '4.0'", "version": "==1.6.0" }, "jsonschema-specifications": { @@ -654,6 +666,7 @@ "sha256:70775750742b25c0d8f36c55aed03d24c3384d17c951b3175d898bd778ef0307" ], "index": "pypi", + "markers": "python_version >= '3.6'", "version": "==1.3.4" }, "multidict": { @@ -792,15 +805,16 @@ "sha256:ffa75af20b44f8dba823498024771d5ac50620e6915abac414251bd971b4529f" ], "index": "pypi", + "markers": "python_version >= '3.9'", "version": "==1.26.4" }, "packaging": { "hashes": [ - "sha256:048fb0e9405036518eaaf48a55953c750c11e1a1b68e0dd1a9d62ed0c092cfc5", - "sha256:8c491190033a9af7e1d931d0b5dacc2ef47509b34dd0de67ed209b5203fc88c7" + "sha256:2ddfb553fdf02fb784c234c7ba6ccc288296ceabec964ad2eae3777778130bc5", + "sha256:eb82c5e3e56209074766e6885bb04b8c38a0c015d0a30036ebe7ece34c9989e9" ], "markers": "python_version >= '3.7'", - "version": "==23.2" + "version": "==24.0" }, "pandas": { "hashes": [ @@ -835,6 +849,7 @@ "sha256:f9d3558d263073ed95e46f4650becff0c5e1ffe0fc3a015de3c79283dfbdb3df" ], "index": "pypi", + "markers": "python_version >= '3.9'", "version": "==2.2.1" }, "pycares": { @@ -896,18 +911,19 @@ }, "pycparser": { "hashes": [ - "sha256:8ee45429555515e1f6b185e78100aea234072576aa43ab53aefcae078162fca9", - "sha256:e644fdec12f7872f86c58ff790da456218b10f863970249516d60a5eaca77206" + "sha256:491c8be9c040f5390f5bf44a5b07752bd07f56edf992381b05c701439eec10f6", + "sha256:c3702b6d3dd8c7abc1afa565d7e63d53a1d0bd86cdc24edd75470f4de499cfcc" ], - "version": "==2.21" + "markers": "python_version >= '3.8'", + "version": "==2.22" }, "pydantic": { "hashes": [ - "sha256:72c6034df47f46ccdf81869fddb81aade68056003900a8724a4f160700016a2a", - "sha256:e07805c4c7f5c6826e33a1d4c9d47950d7eaf34868e2690f8594d2e30241f11f" + "sha256:b1704e0847db01817624a6b86766967f552dd9dbf3afba4004409f908dcc84e6", + "sha256:cc46fce86607580867bdc3361ad462bab9c222ef042d3da86f2fb333e1d916c5" ], "markers": "python_version >= '3.8'", - "version": "==2.6.3" + "version": "==2.6.4" }, "pydantic-core": { "hashes": [ @@ -1000,6 +1016,7 @@ "sha256:a8b2bc7bffae282281c8140a97d3aa9c14da0b136dfe83f850eea9a5f7470427" ], "index": "pypi", + "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2'", "version": "==2.9.0.post0" }, "python-dotenv": { @@ -1070,16 +1087,16 @@ "sha256:fd1592b3fdf65fff2ad0004b5e363300ef59ced41c2e6b3a99d4089fa8c5435d", "sha256:fd66fc5d0da6d9815ba2cebeb4205f95818ff4b79c3ebe268e75d961704af52f" ], - "index": "pypi", + "markers": "python_version >= '3.6'", "version": "==6.0.1" }, "referencing": { "hashes": [ - "sha256:39240f2ecc770258f28b642dd47fd74bc8b02484de54e1882b74b35ebd779bd5", - "sha256:c775fedf74bc0f9189c2a3be1c12fd03e8c23f4d371dce795df44e06c5b412f7" + "sha256:5773bd84ef41799a5a8ca72dc34590c041eb01bf9aa02632b4a973fb0181a844", + "sha256:d53ae300ceddd3169f1ffa9caf2cb7b769e92657e4fafb23d34b93679116dfd4" ], "markers": "python_version >= '3.8'", - "version": "==0.33.0" + "version": "==0.34.0" }, "requests": { "hashes": [ @@ -1087,6 +1104,7 @@ "sha256:942c5a758f98d790eaed1a29cb6eefc7ffb0d1cf7af05c3d2791656dbd6ad1e1" ], "index": "pypi", + "markers": "python_version >= '3.7'", "version": "==2.31.0" }, "requests-toolbelt": { @@ -1095,6 +1113,7 @@ "sha256:cccfdd665f0a24fcf4726e690f65639d272bb0637b9b92dfd91a5568ccf6bd06" ], "index": "pypi", + "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'", "version": "==1.0.0" }, "rpds-py": { @@ -1215,7 +1234,7 @@ "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926", "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254" ], - "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'", + "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2'", "version": "==1.16.0" }, "sniffio": { @@ -1279,11 +1298,11 @@ "standard" ], "hashes": [ - "sha256:3d9a267296243532db80c83a959a3400502165ade2c1338dea4e67915fd4745a", - "sha256:5c89da2f3895767472a35556e539fd59f7edbe9b1e9c0e1c99eebeadc61838e4" + "sha256:2c2aac7ff4f4365c206fd773a39bf4ebd1047c238f8b8268ad996829323473de", + "sha256:6a69214c0b6a087462412670b3ef21224fa48cae0e452b5883e8e8bdfdd11dd0" ], - "index": "pypi", - "version": "==0.27.1" + "markers": "python_version >= '3.8'", + "version": "==0.29.0" }, "uvloop": { "hashes": [ @@ -1794,111 +1813,112 @@ }, "contourpy": { "hashes": [ - "sha256:0274c1cb63625972c0c007ab14dd9ba9e199c36ae1a231ce45d725cbcbfd10a8", - "sha256:0d7e03c0f9a4f90dc18d4e77e9ef4ec7b7bbb437f7f675be8e530d65ae6ef956", - "sha256:11f8d2554e52f459918f7b8e6aa20ec2a3bce35ce95c1f0ef4ba36fbda306df5", - "sha256:139d8d2e1c1dd52d78682f505e980f592ba53c9f73bd6be102233e358b401063", - "sha256:16a7380e943a6d52472096cb7ad5264ecee36ed60888e2a3d3814991a0107286", - 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