peakdetect 1.2 causes dependency conflict

[antonkulaga]

Looks like peakdetect that you use depends on super-outdated scipy, for this reason I get:

  from scipy import fft, ifft
ImportError: cannot import name 'ifft' from 'scipy' (/home/antonkulaga/.local/lib/python3.10/site-packages/scipy/__init__.py)

The proper way to import is:

from scipy.fft import ifft

[kevinjohncutler]

@antonkulaga what version of Omnipose are you using? Peakdetect was removed from the dependencies a while ago. I do see that I have it in a conda env file for linux installs, which has not been updated in a while.

[folterj]

I've got the same issue, pip installed the latest version (1.0.6) of Omnipose today on Windows.
As scipy does not appear to have the version pinned, it installs the latest version of scipy: version 1.14.0.

[folterj]

So the problem is that peakdetect is ancient, doesn't have scipy version pinned - which would require an equally ancient version of scipy (<1.3.0?).
The change you mention @antonkulaga does not appear to be in the latest release of Omnipose on pypi yet:
e349761