diff --git a/kf_lib_data_ingest/common/constants.py b/kf_lib_data_ingest/common/constants.py index 78bfa856..d6eb12e0 100644 --- a/kf_lib_data_ingest/common/constants.py +++ b/kf_lib_data_ingest/common/constants.py @@ -39,6 +39,7 @@ class HASH: class SPECIMEN: class COMPOSITION: + AMNIOCYTE = "Amniocyte" BLOOD = "Peripheral Whole Blood" BONE = "Bone" BONE_MARROW = "Bone Marrow" @@ -57,13 +58,20 @@ class SAMPLE_PROCUREMENT: AUTOPSY = "Autopsy" BIOPSY = "Biopsy" BLOOD_DRAW = "Blood Draw" + SALIVA_KIT = "Saliva Kit" SUBTOTAL_RESECTION = "Subtotal Resection" TOTAL_RESECTION = "Gross Total Resection" BONE_MARROW_ASPIRATION = "Bone Marrow Aspiration" class ANATOMY_SITE: + ABDOMINAL_SKIN = "Abdominal Skin" + ARM = "Arm" BONE_MARROW = "Bone Marrow" + DIAPHRAGM = "Diaphragm" + FIBROBLASTS = "Fibroblasts" HAIR = "Hair" + MOUTH = "Mouth" + SKELETAL_MUSCLE = "Skeletal Muscle" SKULL = "Skull" CNS = "Central Nervous System" @@ -388,21 +396,29 @@ class VITAL_STATUS: class RELATIONSHIP: PROBAND = "Proband" + # PARTNERS: HUSBAND = "Husband" WIFE = "Wife" SPOUSE = "Spouse" + # PARENTS: MOTHER = "Mother" FATHER = "Father" PARENT = "Parent" + # CHILDREN: + DAUGHTER = "Daughter" + SON = "Son" + CHILD = "Child" + # SIBLINGS: BROTHER = "Brother" SISTER = "Sister" TWIN_BROTHER = "Twin Brother" TWIN_SISTER = "Twin Sister" TWIN = "Twin" + HALF_BROTHER = "Half-Brother" + HALF_SISTER = "Half-Sister" + HALF_SIBLING = "Half-Sibling" SIBLING = "Sibling" - DAUGHTER = "Daughter" - SON = "Son" - CHILD = "Child" + # GRANDPARENTS: MATERNAL_GRANDMOTHER = "Maternal Grandmother" MATERNAL_GRANDFATHER = "Maternal Grandfather" MATERNAL_GRANDPARENT = "Maternal Grandparent" @@ -412,6 +428,7 @@ class RELATIONSHIP: GRANDMOTHER = "Grandmother" GRANDFATHER = "Grandfather" GRANDPARENT = "Grandparent" + # GRANDCHILDREN: MATERNAL_GRANDDAUGHTER = "Maternal Granddaughter" MATERNAL_GRANDSON = "Maternal Grandson" MATERNAL_GRANDCHILD = "Maternal Grandchild" @@ -421,6 +438,64 @@ class RELATIONSHIP: GRANDDAUGHTER = "Granddaughter" GRANDSON = "Grandson" GRANDCHILD = "Grandchild" + # GREAT GRANDPARENTS: + MATERNAL_GREAT_GRANDMOTHER = "Maternal Great-Grandmother" + MATERNAL_GREAT_GRANDFATHER = "Maternal Great-Grandfather" + MATERNAL_GREAT_GRANDPARENT = "Maternal Great-Grandparent" + PATERNAL_GREAT_GRANDMOTHER = "Paternal Great-Grandmother" + PATERNAL_GREAT_GRANDFATHER = "Paternal Great-Grandfather" + PATERNAL_GREAT_GRANDPARENT = "Paternal Great-Grandparent" + GREAT_GRANDMOTHER = "Great-Grandmother" + GREAT_GRANDFATHER = "Great-Grandfather" + GREAT_GRANDPARENT = "Great-Grandparent" + # GREAT GRANDCHILDREN: + MATERNAL_GREAT_GRANDDAUGHTER = "Maternal Great-Granddaughter" + MATERNAL_GREAT_GRANDSON = "Maternal Great-Grandson" + MATERNAL_GREAT_GRANDCHILD = "Maternal Great-Grandchild" + PATERNAL_GREAT_GRANDDAUGHTER = "Paternal Great-Granddaughter" + PATERNAL_GREAT_GRANDSON = "Paternal Great-Grandson" + PATERNAL_GREAT_GRANDCHILD = "Paternal Great-Grandchild" + GREAT_GRANDDAUGHTER = "Great-Granddaughter" + GREAT_GRANDSON = "Great-Grandson" + GREAT_GRANDCHILD = "Great-Grandchild" + # AUNTS/UNCLES: + MATERNAL_AUNT = "Maternal Aunt" + MATERNAL_UNCLE = "Maternal Uncle" + PATERNAL_AUNT = "Paternal Aunt" + PATERNAL_UNCLE = "Paternal Uncle" + AUNT = "Aunt" + UNCLE = "Uncle" + # GREAT AUNTS/UNCLES: + MATERNAL_GREAT_AUNT = "Maternal Great Aunt" + MATERNAL_GREAT_UNCLE = "Maternal Great Uncle" + PATERNAL_GREAT_AUNT = "Paternal Great Aunt" + PATERNAL_GREAT_UNCLE = "Paternal Great Uncle" + GREAT_AUNT = "Great Aunt" + GREAT_UNCLE = "Great Uncle" + # NEPHEWS/NIECES: + MATERNAL_NEPHEW = "Maternal Nephew" + MATERNAL_NIECE = "Maternal Niece" + PATERNAL_NEPHEW = "Paternal Nephew" + PATERNAL_NIECE = "Paternal Niece" + NEPHEW = "Nephew" + NIECE = "Niece" + # GREAT NEPHEWS/NIECES: + MATERNAL_GREAT_NEPHEW = "Maternal Great Nephew" + MATERNAL_GREAT_NIECE = "Maternal Great Niece" + PATERNAL_GREAT_NEPHEW = "Paternal Great Nephew" + PATERNAL_GREAT_NIECE = "Paternal Great Niece" + GREAT_NEPHEW = "Great Nephew" + GREAT_NIECE = "Great Niece" + # COUSINS: + MATERNAL_FIRST_COUSIN = "Maternal First Cousin" + PATERNAL_FIRST_COUSIN = "Paternal First Cousin" + FIRST_COUSIN = "First Cousin" + MATERNAL_SECOND_COUSIN = "Maternal Second Cousin" + PATERNAL_SECOND_COUSIN = "Paternal Second Cousin" + SECOND_COUSIN = "Second Cousin" + MATERNAL_COUSIN = "Maternal Cousin" + PATERNAL_COUSIN = "Paternal Cousin" + COUSIN = "Cousin" R = RELATIONSHIP