identical to 5.10

kingaa · Jul 1, 2024 · 0718fbb · 0718fbb
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: pomp
 Type: Package
 Title: Statistical Inference for Partially Observed Markov Processes
-Version: 5.9.1.1
-Date: 2024-06-29
+Version: 5.10.0.0
+Date: 2024-07-01
 Authors@R: c(person(given=c("Aaron","A."),family="King",role=c("aut","cre"),email="[email protected]",comment=c(ORCID="0000-0001-6159-3207")),
 	  person(given=c("Edward","L."),family="Ionides",role="aut",comment=c(ORCID="0000-0002-4190-0174"))	,
 	  person(given="Carles",family="Bretó",role="aut",comment=c(ORCID="0000-0003-4695-4902")),
@@ -29,7 +29,7 @@ LazyData: true
 BugReports: https://github.com/kingaa/pomp/issues/
 Encoding: UTF-8
 Roxygen: list(roclets = c("collate", "namespace", "rd"))
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 Collate: 
     'package.R'
     'pstop.R'

diff --git a/tests/R_v_C.Rout b/tests/R_v_C.Rout
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 
@@ -109,16 +109,16 @@ Type 'q()' to quit R.
 > ## ----comparison----------------------------------------------------------
 > system.time(simulate(gompertz,nsim=10000,format="arrays"))
    user  system elapsed 
-  5.506   0.115   5.621 
+  5.458   0.092   5.552 
 > system.time(simulate(Gompertz,nsim=10000,format="arrays"))
    user  system elapsed 
-  0.167   0.004   0.171 
+  0.152   0.008   0.160 
 > system.time(pfilter(gompertz,Np=1000))
    user  system elapsed 
-  0.583   0.000   0.582 
+  0.557   0.016   0.573 
 > system.time(pfilter(Gompertz,Np=1000))
    user  system elapsed 
-  0.029   0.000   0.029 
+  0.028   0.000   0.028 
 > 
 > dev.off()
 null device 

diff --git a/tests/abc.Rout.save b/tests/abc.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/baddm.Rout.save b/tests/baddm.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/bake.Rout.save b/tests/bake.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/basic_probes.Rout.save b/tests/basic_probes.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/betabinom.Rout.save b/tests/betabinom.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/blowflies.Rout.save b/tests/blowflies.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/bsmc2.Rout.save b/tests/bsmc2.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/bsplines1.Rout.save b/tests/bsplines1.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/bsplines2.Rout.save b/tests/bsplines2.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/concat.Rout.save b/tests/concat.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/covmat.Rout.save b/tests/covmat.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/csnippet.Rout.save b/tests/csnippet.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/dacca.Rout.save b/tests/dacca.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/dinit.Rout.save b/tests/dinit.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/dp.Rout.save b/tests/dp.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/dprocess.Rout.save b/tests/dprocess.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/ebola.Rout.save b/tests/ebola.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/emeasure.Rout.save b/tests/emeasure.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/eulermultinom.Rout.save b/tests/eulermultinom.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/flow.Rout.save b/tests/flow.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/gillespie.Rout.save b/tests/gillespie.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/gompertz.Rout.save b/tests/gompertz.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/helpers.Rout.save b/tests/helpers.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/hitch.Rout.save b/tests/hitch.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/issue109.Rout.save b/tests/issue109.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/issue56.Rout.save b/tests/issue56.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/kalman.Rout.save b/tests/kalman.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/kalman2.Rout.save b/tests/kalman2.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/link.Rout.save b/tests/link.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/load.Rout.save b/tests/load.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/logmeanexp.Rout.save b/tests/logmeanexp.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/lookup.Rout.save b/tests/lookup.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/map.Rout.save b/tests/map.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/mcap.Rout.save b/tests/mcap.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/measure.Rout.save b/tests/measure.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/mif2.Rout.save b/tests/mif2.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/mif2_index.Rout.save b/tests/mif2_index.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/mif2_kf.Rout.save b/tests/mif2_kf.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/nlf.Rout.save b/tests/nlf.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/nullcases.Rout.save b/tests/nullcases.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/ou2.Rout.save b/tests/ou2.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/parmat.Rout.save b/tests/parmat.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/partrans.Rout.save b/tests/partrans.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/pfilter.Rout.save b/tests/pfilter.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/pfilter2.Rout.save b/tests/pfilter2.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/pmcmc.Rout.save b/tests/pmcmc.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/pomp.Rout.save b/tests/pomp.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/pomp_fun.Rout.save b/tests/pomp_fun.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/pomp_methods.Rout.save b/tests/pomp_methods.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu
 

diff --git a/tests/prior.Rout.save b/tests/prior.Rout.save
@@ -1,5 +1,5 @@
 
-R version 4.4.0 (2024-04-24) -- "Puppy Cup"
+R version 4.4.1 (2024-06-14) -- "Race for Your Life"
 Copyright (C) 2024 The R Foundation for Statistical Computing
 Platform: x86_64-pc-linux-gnu