diff --git a/revdep/Outputs/check_CollocInfer_stderr.txt b/revdep/Outputs/check_CollocInfer_stderr.txt
index 906b2800a..e5c90c789 100644
--- a/revdep/Outputs/check_CollocInfer_stderr.txt
+++ b/revdep/Outputs/check_CollocInfer_stderr.txt
@@ -1,6 +1,6 @@
 
 See
-  '/home/kingaa/projects/Rpkg/pomp/revdep/CollocInfer.Rcheck/00check.log'
+  '/userdata/kingaa/projects/Rpkg/pomp/revdep/CollocInfer.Rcheck/00check.log'
 for details.
 
 
diff --git a/revdep/Outputs/check_CollocInfer_stdout.txt b/revdep/Outputs/check_CollocInfer_stdout.txt
index f424c3c7a..ce604543f 100644
--- a/revdep/Outputs/check_CollocInfer_stdout.txt
+++ b/revdep/Outputs/check_CollocInfer_stdout.txt
@@ -1,4 +1,4 @@
-* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/CollocInfer.Rcheck'
+* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/CollocInfer.Rcheck'
 * using R version 4.2.2 (2022-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * using session charset: UTF-8
@@ -14,10 +14,11 @@
 * checking for portable file names ... OK
 * checking for sufficient/correct file permissions ... OK
 * checking serialization versions ... OK
-* checking whether package 'CollocInfer' can be installed ... [16s/15s] OK
+* checking whether package 'CollocInfer' can be installed ... [30s/20s] OK
 * checking installed package size ... OK
 * checking package directory ... OK
-* checking for future file timestamps ... OK
+* checking for future file timestamps ... NOTE
+unable to verify current time
 * checking DESCRIPTION meta-information ... OK
 * checking top-level files ... OK
 * checking for left-over files ... OK
@@ -36,7 +37,7 @@
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... [33s/25s] NOTE
+* checking R code for possible problems ... [70s/22s] NOTE
 Profile.GausNewt: local variable ‘dcdp’ assigned but may not be used
 Profile.GausNewt: local variable ‘gradnorm0’ assigned but may not be
   used
@@ -78,11 +79,14 @@ Variables with usage in documentation object 'FhNest' but not in code:
 * checking data for ASCII and uncompressed saves ... OK
 * checking examples ... OK
 Examples with CPU (user + system) or elapsed time > 5s
-         user system elapsed
-Profile 3.967 11.652   1.505
+            user system elapsed
+Profile   17.023 51.743   1.319
+FitMatch   5.882 22.446   0.643
+ParsMatch  3.509 14.718   0.313
+smooth     1.373  4.874   0.113
 * checking PDF version of manual ... OK
 * checking HTML version of manual ... OK
 * checking for non-standard things in the check directory ... OK
 * checking for detritus in the temp directory ... OK
 * DONE
-Status: 1 WARNING, 1 NOTE
+Status: 1 WARNING, 2 NOTEs
diff --git a/revdep/Outputs/check_DTAT_stderr.txt b/revdep/Outputs/check_DTAT_stderr.txt
index e91f8e13b..06d643237 100644
--- a/revdep/Outputs/check_DTAT_stderr.txt
+++ b/revdep/Outputs/check_DTAT_stderr.txt
@@ -1,6 +1,6 @@
 
 See
-  '/home/kingaa/projects/Rpkg/pomp/revdep/DTAT.Rcheck/00check.log'
+  '/userdata/kingaa/projects/Rpkg/pomp/revdep/DTAT.Rcheck/00check.log'
 for details.
 
 
diff --git a/revdep/Outputs/check_DTAT_stdout.txt b/revdep/Outputs/check_DTAT_stdout.txt
index 99b509b2b..1fe5f5d1f 100644
--- a/revdep/Outputs/check_DTAT_stdout.txt
+++ b/revdep/Outputs/check_DTAT_stdout.txt
@@ -1,4 +1,4 @@
-* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/DTAT.Rcheck'
+* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/DTAT.Rcheck'
 * using R version 4.2.2 (2022-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * using session charset: UTF-8
@@ -16,10 +16,11 @@
 * checking for portable file names ... OK
 * checking for sufficient/correct file permissions ... OK
 * checking serialization versions ... OK
-* checking whether package 'DTAT' can be installed ... [15s/14s] OK
+* checking whether package 'DTAT' can be installed ... [27s/14s] OK
 * checking installed package size ... OK
 * checking package directory ... OK
-* checking for future file timestamps ... OK
+* checking for future file timestamps ... NOTE
+unable to verify current time
 * checking 'build' directory ... OK
 * checking DESCRIPTION meta-information ... OK
 * checking top-level files ... OK
@@ -39,7 +40,7 @@
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... [25s/14s] NOTE
+* checking R code for possible problems ... [68s/14s] NOTE
 dose.survfit: local variable ‘S’ assigned but may not be used
 as_d3_data,DE : rel_dose: local variable ‘where_na’ assigned but may
   not be used
@@ -59,6 +60,9 @@ initialize,DE: local variable ‘Q1’ assigned but may not be used
 * checking installed files from 'inst/doc' ... OK
 * checking files in 'vignettes' ... OK
 * checking examples ... OK
+Examples with CPU (user + system) or elapsed time > 5s
+               user system elapsed
+Onoue.Friberg 3.405  6.673   1.782
 ** found \donttest examples: check also with --run-donttest
 * checking for unstated dependencies in vignettes ... OK
 * checking package vignettes in 'inst/doc' ... OK
@@ -67,4 +71,4 @@ initialize,DE: local variable ‘Q1’ assigned but may not be used
 * checking for non-standard things in the check directory ... OK
 * checking for detritus in the temp directory ... OK
 * DONE
-Status: 1 NOTE
+Status: 2 NOTEs
diff --git a/revdep/Outputs/check_circumstance_stderr.txt b/revdep/Outputs/check_circumstance_stderr.txt
index ea37d6140..25cd82443 100644
--- a/revdep/Outputs/check_circumstance_stderr.txt
+++ b/revdep/Outputs/check_circumstance_stderr.txt
@@ -1,6 +1,10 @@
+  Running ‘mif2.R’
+  Comparing ‘mif2.Rout’ to ‘mif2.Rout.save’ ... OK
   Running ‘pfilter.R’
-  Comparing ‘pfilter.Rout’ to ‘pfilter.Rout.save’ ...
+  Comparing ‘pfilter.Rout’ to ‘pfilter.Rout.save’ ... OK
+
 See
-  '/home/kingaa/projects/Rpkg/pomp/revdep/circumstance.Rcheck/00check.log'
+  '/userdata/kingaa/projects/Rpkg/pomp/revdep/circumstance.Rcheck/00check.log'
 for details.
 
+
diff --git a/revdep/Outputs/check_circumstance_stdout.txt b/revdep/Outputs/check_circumstance_stdout.txt
index 3b7fba48d..e7cc209fb 100644
--- a/revdep/Outputs/check_circumstance_stdout.txt
+++ b/revdep/Outputs/check_circumstance_stdout.txt
@@ -1,15 +1,14 @@
-* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/circumstance.Rcheck'
+* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/circumstance.Rcheck'
 * using R version 4.2.2 (2022-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * using session charset: UTF-8
 * using option '--as-cran'
 * checking for file 'circumstance/DESCRIPTION' ... OK
 * checking extension type ... Package
-* this is package 'circumstance' version '0.0.2.0'
+* this is package 'circumstance' version '0.0.5.2'
 * package encoding: UTF-8
 * checking package namespace information ... OK
-* checking package dependencies ... NOTE
-Suggests orphaned package: 'doRNG'
+* checking package dependencies ... OK
 * checking if this is a source package ... OK
 * checking if there is a namespace ... OK
 * checking for executable files ... OK
@@ -19,7 +18,8 @@ Suggests orphaned package: 'doRNG'
 * checking whether package 'circumstance' can be installed ... OK
 * checking installed package size ... OK
 * checking package directory ... OK
-* checking for future file timestamps ... OK
+* checking for future file timestamps ... NOTE
+unable to verify current time
 * checking DESCRIPTION meta-information ... OK
 * checking top-level files ... OK
 * checking for left-over files ... OK
@@ -34,10 +34,7 @@ Suggests orphaned package: 'doRNG'
 * checking whether the namespace can be unloaded cleanly ... OK
 * checking loading without being on the library search path ... OK
 * checking use of S3 registration ... OK
-* checking dependencies in R code ... NOTE
-Package in Depends field not imported from: ‘parallel’
-  These packages need to be imported from (in the NAMESPACE file)
-  for when this namespace is loaded but not attached.
+* checking dependencies in R code ... OK
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
@@ -51,48 +48,16 @@ Package in Depends field not imported from: ‘parallel’
 * checking Rd \usage sections ... OK
 * checking Rd contents ... OK
 * checking for unstated dependencies in examples ... OK
-* checking examples ... ERROR
-Running examples in 'circumstance-Ex.R' failed
-The error most likely occurred in:
-
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
-> ### Name: pfilter
-> ### Title: Parallel particle filter computations
-> ### Aliases: pfilter pfilter,ANY,numeric-method pfilter-ANY,numeric
-> ###   pfilter,ANY,missing-method pfilter-ANY,missing
-> ###   pfilter,pompList,numeric-method pfilter-pompList,numeric
-> ###   pfilter,pompList,missing-method pfilter-pompList,missing
-> 
-> ### ** Examples
-> 
-> library(circumstance)
-> 
-> ou2() -> ou2
-> ou2 %>% pfilter(Np=1000,Nrep=6) -> pfs
-Error in ou2 %>% pfilter(Np = 1000, Nrep = 6) : 
-  could not find function "%>%"
-Execution halted
+* checking installed files from 'inst/doc' ... OK
+* checking examples ... OK
+Examples with CPU (user + system) or elapsed time > 5s
+         user system elapsed
+pfilter 5.239  0.297   4.529
 * checking for unstated dependencies in 'tests' ... OK
 * checking tests ...
-47,53c47,53
-<   .id time    y1    y2     x1    x2   ess cond.logLik
-< 1   1    1 -4.05 4.781 -3.718  4.25 160.6       -4.31
-< 2   1    2  1.83 6.273  0.940  6.84 148.1       -4.42
-< 3   1    3 -1.32 7.556 -0.373  7.59  71.4       -5.20
-< 4   1    4  6.64 5.730  5.809  6.49  76.1       -5.01
-< 5   1    5  6.58 1.561  5.605  1.84 217.1       -3.99
-< 6   1    6  7.54 0.176  7.355 -1.57 135.8       -4.51
----
->   time    y1    y2     x1    x2   ess cond.logLik .id
-> 1    1 -4.05 4.781 -3.718  4.25 160.6       -4.31   1
-> 2    2  1.83 6.273  0.940  6.84 148.1       -4.42   1
-> 3    3 -1.32 7.556 -0.373  7.59  71.4       -5.20   1
-> 4    4  6.64 5.730  5.809  6.49  76.1       -5.01   1
-> 5    5  6.58 1.561  5.605  1.84 217.1       -3.99   1
-> 6    6  7.54 0.176  7.355 -1.57 135.8       -4.51   1
- OK
+ [20s/13s] OK
 * checking PDF version of manual ... OK
 * checking for non-standard things in the check directory ... OK
 * checking for detritus in the temp directory ... OK
 * DONE
-Status: 1 ERROR, 2 NOTEs
+Status: 1 NOTE
diff --git a/revdep/Outputs/check_epimdr2_stderr.txt b/revdep/Outputs/check_epimdr2_stderr.txt
index d40e12fc1..34c457c15 100644
--- a/revdep/Outputs/check_epimdr2_stderr.txt
+++ b/revdep/Outputs/check_epimdr2_stderr.txt
@@ -1,6 +1,6 @@
 
 See
-  '/home/kingaa/projects/Rpkg/pomp/revdep/epimdr2.Rcheck/00check.log'
+  '/userdata/kingaa/projects/Rpkg/pomp/revdep/epimdr2.Rcheck/00check.log'
 for details.
 
 
diff --git a/revdep/Outputs/check_epimdr2_stdout.txt b/revdep/Outputs/check_epimdr2_stdout.txt
index a325462bd..2019cfeb7 100644
--- a/revdep/Outputs/check_epimdr2_stdout.txt
+++ b/revdep/Outputs/check_epimdr2_stdout.txt
@@ -1,4 +1,4 @@
-* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/epimdr2.Rcheck'
+* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/epimdr2.Rcheck'
 * using R version 4.2.2 (2022-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * using session charset: UTF-8
@@ -14,10 +14,11 @@
 * checking for hidden files and directories ... OK
 * checking for portable file names ... OK
 * checking for sufficient/correct file permissions ... OK
-* checking whether package 'epimdr2' can be installed ... [16s/14s] OK
+* checking whether package 'epimdr2' can be installed ... [31s/17s] OK
 * checking installed package size ... OK
 * checking package directory ... OK
-* checking for future file timestamps ... OK
+* checking for future file timestamps ... NOTE
+unable to verify current time
 * checking DESCRIPTION meta-information ... OK
 * checking top-level files ... OK
 * checking for left-over files ... OK
@@ -36,7 +37,7 @@
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... [22s/14s] NOTE
+* checking R code for possible problems ... [53s/11s] NOTE
 coyne: local variable ‘H1’ assigned but may not be used
 coyne: local variable ‘H2’ assigned but may not be used
 coyne: local variable ‘I’ assigned but may not be used
@@ -148,10 +149,10 @@ twostrain: local variable ‘res’ assigned but may not be used
 * checking data for non-ASCII characters ... OK
 * checking LazyData ... OK
 * checking data for ASCII and uncompressed saves ... OK
-* checking examples ... [14s/12s] OK
+* checking examples ... [20s/11s] OK
 ** found \donttest examples: check also with --run-donttest
 * checking PDF version of manual ... OK
 * checking for non-standard things in the check directory ... OK
 * checking for detritus in the temp directory ... OK
 * DONE
-Status: 1 NOTE
+Status: 2 NOTEs
diff --git a/revdep/Outputs/check_epimdr_stderr.txt b/revdep/Outputs/check_epimdr_stderr.txt
index 5b2bdb870..c3f294215 100644
--- a/revdep/Outputs/check_epimdr_stderr.txt
+++ b/revdep/Outputs/check_epimdr_stderr.txt
@@ -1,6 +1,6 @@
 
 See
-  '/home/kingaa/projects/Rpkg/pomp/revdep/epimdr.Rcheck/00check.log'
+  '/userdata/kingaa/projects/Rpkg/pomp/revdep/epimdr.Rcheck/00check.log'
 for details.
 
 
diff --git a/revdep/Outputs/check_epimdr_stdout.txt b/revdep/Outputs/check_epimdr_stdout.txt
index 2e00d6d99..2cea9eaf6 100644
--- a/revdep/Outputs/check_epimdr_stdout.txt
+++ b/revdep/Outputs/check_epimdr_stdout.txt
@@ -1,4 +1,4 @@
-* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/epimdr.Rcheck'
+* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/epimdr.Rcheck'
 * using R version 4.2.2 (2022-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * using session charset: UTF-8
@@ -15,7 +15,7 @@
 * checking for portable file names ... OK
 * checking for sufficient/correct file permissions ... OK
 * checking serialization versions ... OK
-* checking whether package 'epimdr' can be installed ... OK
+* checking whether package 'epimdr' can be installed ... [28s/12s] OK
 * checking installed package size ... OK
 * checking package directory ... OK
 * checking for future file timestamps ... OK
diff --git a/revdep/Outputs/check_panelPomp_stderr.txt b/revdep/Outputs/check_panelPomp_stderr.txt
index c10463872..56031e2b9 100644
--- a/revdep/Outputs/check_panelPomp_stderr.txt
+++ b/revdep/Outputs/check_panelPomp_stderr.txt
@@ -2,35 +2,26 @@
   Running ‘aaa.R’
   Comparing ‘aaa.Rout’ to ‘aaa.Rout.save’ ... OK
   Running ‘contacts.R’
-  Comparing ‘contacts.Rout’ to ‘contacts.Rout.save’ ... OK
-  Running ‘get_col_row.R’
-  Comparing ‘get_col_row.Rout’ to ‘get_col_row.Rout.save’ ... OK
-  Running ‘mif2.R’
+  Comparing ‘contacts.Rout’ to ‘contacts.Rout.save’ ...  Running ‘get_col_row.R’
+  Comparing ‘get_col_row.Rout’ to ‘get_col_row.Rout.save’ ...  Running ‘mif2.R’
   Comparing ‘mif2.Rout’ to ‘mif2.Rout.save’ ...  Running ‘mif2_intern.R’
   Comparing ‘mif2_intern.Rout’ to ‘mif2_intern.Rout.save’ ...  Running ‘mif2_methods.R’
   Comparing ‘mif2_methods.Rout’ to ‘mif2_methods.Rout.save’ ...  Running ‘panelGompertz.R’
-  Comparing ‘panelGompertz.Rout’ to ‘panelGompertz.Rout.save’ ... OK
-  Running ‘panelGompertzLikelihood.R’
+  Comparing ‘panelGompertz.Rout’ to ‘panelGompertz.Rout.save’ ...  Running ‘panelGompertzLikelihood.R’
   Comparing ‘panelGompertzLikelihood.Rout’ to ‘panelGompertzLikelihood.Rout.save’ ...  Running ‘panelPomp.R’
-  Comparing ‘panelPomp.Rout’ to ‘panelPomp.Rout.save’ ... OK
-  Running ‘panelPomp_methods.R’
-  Comparing ‘panelPomp_methods.Rout’ to ‘panelPomp_methods.Rout.save’ ... OK
-  Running ‘panelRandomWalk.R’
-  Comparing ‘panelRandomWalk.Rout’ to ‘panelRandomWalk.Rout.save’ ... OK
-  Running ‘panel_loglik.R’
-  Comparing ‘panel_loglik.Rout’ to ‘panel_loglik.Rout.save’ ... OK
-  Running ‘params.R’
-  Comparing ‘params.Rout’ to ‘params.Rout.save’ ... OK
-  Running ‘pfilter.R’
-  Comparing ‘pfilter.Rout’ to ‘pfilter.Rout.save’ ... OK
-  Running ‘pfilter_methods.R’
-  Comparing ‘pfilter_methods.Rout’ to ‘pfilter_methods.Rout.save’ ... OK
-  Running ‘plot.R’
-  Comparing ‘plot.Rout’ to ‘plot.Rout.save’ ... OK
-  Running ‘print-results.R’
-  Comparing ‘print-results.Rout’ to ‘print-results.Rout.save’ ... OK
-  Running ‘seeded-results.R’
+  Comparing ‘panelPomp.Rout’ to ‘panelPomp.Rout.save’ ...  Running ‘panelPomp_methods.R’
+  Comparing ‘panelPomp_methods.Rout’ to ‘panelPomp_methods.Rout.save’ ...  Running ‘panelRandomWalk.R’
+  Comparing ‘panelRandomWalk.Rout’ to ‘panelRandomWalk.Rout.save’ ...  Running ‘panel_loglik.R’
+  Comparing ‘panel_loglik.Rout’ to ‘panel_loglik.Rout.save’ ...  Running ‘params.R’
+  Comparing ‘params.Rout’ to ‘params.Rout.save’ ...  Running ‘pfilter.R’
+  Comparing ‘pfilter.Rout’ to ‘pfilter.Rout.save’ ...  Running ‘pfilter_methods.R’
+  Comparing ‘pfilter_methods.Rout’ to ‘pfilter_methods.Rout.save’ ...  Running ‘plot.R’
+  Comparing ‘plot.Rout’ to ‘plot.Rout.save’ ...  Running ‘print-results.R’
+  Comparing ‘print-results.Rout’ to ‘print-results.Rout.save’ ...  Running ‘seeded-results.R’
   Comparing ‘seeded-results.Rout’ to ‘seeded-results.Rout.save’ ...  Running ‘simulate.R’
-  Comparing ‘simulate.Rout’ to ‘simulate.Rout.save’ ... OK
+  Comparing ‘simulate.Rout’ to ‘simulate.Rout.save’ ...
+See
+  '/userdata/kingaa/projects/Rpkg/pomp/revdep/panelPomp.Rcheck/00check.log'
+for details.
 
 
diff --git a/revdep/Outputs/check_panelPomp_stdout.txt b/revdep/Outputs/check_panelPomp_stdout.txt
index 695f15364..f9466422d 100644
--- a/revdep/Outputs/check_panelPomp_stdout.txt
+++ b/revdep/Outputs/check_panelPomp_stdout.txt
@@ -1,11 +1,11 @@
-* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/panelPomp.Rcheck'
+* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/panelPomp.Rcheck'
 * using R version 4.2.2 (2022-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * using session charset: UTF-8
 * using option '--as-cran'
 * checking for file 'panelPomp/DESCRIPTION' ... OK
 * checking extension type ... Package
-* this is package 'panelPomp' version '0.15.0'
+* this is package 'panelPomp' version '0.16.0'
 * package encoding: UTF-8
 * checking package namespace information ... OK
 * checking package dependencies ... OK
@@ -18,7 +18,8 @@
 * checking whether package 'panelPomp' can be installed ... OK
 * checking installed package size ... OK
 * checking package directory ... OK
-* checking for future file timestamps ... OK
+* checking for future file timestamps ... NOTE
+unable to verify current time
 * checking DESCRIPTION meta-information ... OK
 * checking top-level files ... OK
 * checking for left-over files ... OK
@@ -37,7 +38,7 @@
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... [19s/12s] OK
+* checking R code for possible problems ... OK
 * checking Rd files ... OK
 * checking Rd metadata ... OK
 * checking Rd line widths ... OK
@@ -50,118 +51,207 @@
 * checking examples ... OK
 * checking for unstated dependencies in 'tests' ... OK
 * checking tests ...
-34,37d33
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-43,46d38
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-53,56d44
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-63,66d50
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-73,76d56
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-83,86d62
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-93,96d68
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-107,110d78
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-141,144d108
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-154,157d117
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-165,168d124
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-172,175d127
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-20,23d19
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-33,36d28
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-46,49d37
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-60,63d47
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-73,76d56
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-14,17d13
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-22d21
-< NOTE: in 'stew': recomputing archive panelGompertzLikelihood.rda.
-123,138d122
-< Warning messages:
-< 1: 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-< 2: 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-< 3: 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-< 4: 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-< 5: 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
- [102s/51s] OK
+5,12d4
+< 
+< Welcome to pomp!
+< 
+< As of version 4.6, no user-visible pomp function has a name that
+< includes a dot ('.'). Function names have been changed to replace the
+< dot with an underscore ('_'). For more information, see the pomp blog:
+< https://kingaa.github.io/pomp/blog.html.
+< 
+20c12
+<         t
+---
+>         time
+23c15
+<         t
+---
+>         time
+4,11d3
+< 
+< Welcome to pomp!
+< 
+< As of version 4.6, no user-visible pomp function has a name that
+< includes a dot ('.'). Function names have been changed to replace the
+< dot with an underscore ('_'). For more information, see the pomp blog:
+< https://kingaa.github.io/pomp/blog.html.
+< 
+4,11d3
+< 
+< Welcome to pomp!
+< 
+< As of version 4.6, no user-visible pomp function has a name that
+< includes a dot ('.'). Function names have been changed to replace the
+< dot with an underscore ('_'). For more information, see the pomp blog:
+< https://kingaa.github.io/pomp/blog.html.
+< 
+4,11d3
+< 
+< Welcome to pomp!
+< 
+< As of version 4.6, no user-visible pomp function has a name that
+< includes a dot ('.'). Function names have been changed to replace the
+< dot with an underscore ('_'). For more information, see the pomp blog:
+< https://kingaa.github.io/pomp/blog.html.
+< 
+4,11d3
+< 
+< Welcome to pomp!
+< 
+< As of version 4.6, no user-visible pomp function has a name that
+< includes a dot ('.'). Function names have been changed to replace the
+< dot with an underscore ('_'). For more information, see the pomp blog:
+< https://kingaa.github.io/pomp/blog.html.
+< 
+5,12d4
+< 
+< Welcome to pomp!
+< 
+< As of version 4.6, no user-visible pomp function has a name that
+< includes a dot ('.'). Function names have been changed to replace the
+< dot with an underscore ('_'). For more information, see the pomp blog:
+< https://kingaa.github.io/pomp/blog.html.
+< 
+20c12
+<         t
+---
+>         time
+23c15
+<         t
+---
+>         time
+4,11d3
+< 
+< Welcome to pomp!
+< 
+< As of version 4.6, no user-visible pomp function has a name that
+< includes a dot ('.'). Function names have been changed to replace the
+< dot with an underscore ('_'). For more information, see the pomp blog:
+< https://kingaa.github.io/pomp/blog.html.
+< 
+4,11d3
+< 
+< Welcome to pomp!
+< 
+< As of version 4.6, no user-visible pomp function has a name that
+< includes a dot ('.'). Function names have been changed to replace the
+< dot with an underscore ('_'). For more information, see the pomp blog:
+< https://kingaa.github.io/pomp/blog.html.
+< 
+6,13d5
+< 
+< Welcome to pomp!
+< 
+< As of version 4.6, no user-visible pomp function has a name that
+< includes a dot ('.'). Function names have been changed to replace the
+< dot with an underscore ('_'). For more information, see the pomp blog:
+< https://kingaa.github.io/pomp/blog.html.
+< 
+5,12d4
+< 
+< Welcome to pomp!
+< 
+< As of version 4.6, no user-visible pomp function has a name that
+< includes a dot ('.'). Function names have been changed to replace the
+< dot with an underscore ('_'). For more information, see the pomp blog:
+< https://kingaa.github.io/pomp/blog.html.
+< 
+20c12
+<         t
+---
+>         time
+23c15
+<         t
+---
+>         time
+4,11d3
+< 
+< Welcome to pomp!
+< 
+< As of version 4.6, no user-visible pomp function has a name that
+< includes a dot ('.'). Function names have been changed to replace the
+< dot with an underscore ('_'). For more information, see the pomp blog:
+< https://kingaa.github.io/pomp/blog.html.
+< 
+4,11d3
+< 
+< Welcome to pomp!
+< 
+< As of version 4.6, no user-visible pomp function has a name that
+< includes a dot ('.'). Function names have been changed to replace the
+< dot with an underscore ('_'). For more information, see the pomp blog:
+< https://kingaa.github.io/pomp/blog.html.
+< 
+4,11d3
+< 
+< Welcome to pomp!
+< 
+< As of version 4.6, no user-visible pomp function has a name that
+< includes a dot ('.'). Function names have been changed to replace the
+< dot with an underscore ('_'). For more information, see the pomp blog:
+< https://kingaa.github.io/pomp/blog.html.
+< 
+4,11d3
+< 
+< Welcome to pomp!
+< 
+< As of version 4.6, no user-visible pomp function has a name that
+< includes a dot ('.'). Function names have been changed to replace the
+< dot with an underscore ('_'). For more information, see the pomp blog:
+< https://kingaa.github.io/pomp/blog.html.
+< 
+6,13d5
+< 
+< Welcome to pomp!
+< 
+< As of version 4.6, no user-visible pomp function has a name that
+< includes a dot ('.'). Function names have been changed to replace the
+< dot with an underscore ('_'). For more information, see the pomp blog:
+< https://kingaa.github.io/pomp/blog.html.
+< 
+4,11d3
+< 
+< Welcome to pomp!
+< 
+< As of version 4.6, no user-visible pomp function has a name that
+< includes a dot ('.'). Function names have been changed to replace the
+< dot with an underscore ('_'). For more information, see the pomp blog:
+< https://kingaa.github.io/pomp/blog.html.
+< 
+33c25
+<         t
+---
+>         time
+38c30
+<         t
+---
+>         time
+6,13d5
+< 
+< Welcome to pomp!
+< 
+< As of version 4.6, no user-visible pomp function has a name that
+< includes a dot ('.'). Function names have been changed to replace the
+< dot with an underscore ('_'). For more information, see the pomp blog:
+< https://kingaa.github.io/pomp/blog.html.
+< 
+4,11d3
+< 
+< Welcome to pomp!
+< 
+< As of version 4.6, no user-visible pomp function has a name that
+< includes a dot ('.'). Function names have been changed to replace the
+< dot with an underscore ('_'). For more information, see the pomp blog:
+< https://kingaa.github.io/pomp/blog.html.
+< 
+17c9
+<         t
+---
+>         time
+ [271s/39s] OK
 * checking PDF version of manual ... OK
 * checking for non-standard things in the check directory ... OK
 * checking for detritus in the temp directory ... OK
 * DONE
-Status: OK
+Status: 1 NOTE
diff --git a/revdep/Outputs/check_phylopomp_stderr.txt b/revdep/Outputs/check_phylopomp_stderr.txt
index 8c9542643..bf55ce616 100644
--- a/revdep/Outputs/check_phylopomp_stderr.txt
+++ b/revdep/Outputs/check_phylopomp_stderr.txt
@@ -2,12 +2,14 @@
   Comparing ‘diagram.Rout’ to ‘diagram.Rout.save’ ... OK
   Running ‘lbdp1.R’
   Comparing ‘lbdp1.Rout’ to ‘lbdp1.Rout.save’ ... OK
-  Running ‘lbdp2.R’ [22s/21s]
+  Running ‘lbdp2.R’ [28s/22s]
   Comparing ‘lbdp2.Rout’ to ‘lbdp2.Rout.save’ ... OK
   Running ‘lineages.R’
   Comparing ‘lineages.Rout’ to ‘lineages.Rout.save’ ... OK
   Running ‘moran1.R’
   Comparing ‘moran1.Rout’ to ‘moran1.Rout.save’ ... OK
+  Running ‘seir1.R’
+  Comparing ‘seir1.Rout’ to ‘seir1.Rout.save’ ... OK
   Running ‘si2r.R’
   Comparing ‘si2r.Rout’ to ‘si2r.Rout.save’ ... OK
   Running ‘siir1.R’
@@ -18,7 +20,7 @@
   Comparing ‘sir1.Rout’ to ‘sir1.Rout.save’ ... OK
 
 See
-  '/home/kingaa/projects/Rpkg/pomp/revdep/phylopomp.Rcheck/00check.log'
+  '/userdata/kingaa/projects/Rpkg/pomp/revdep/phylopomp.Rcheck/00check.log'
 for details.
 
 
diff --git a/revdep/Outputs/check_phylopomp_stdout.txt b/revdep/Outputs/check_phylopomp_stdout.txt
index 9f6298813..3fcc6fef3 100644
--- a/revdep/Outputs/check_phylopomp_stdout.txt
+++ b/revdep/Outputs/check_phylopomp_stdout.txt
@@ -1,28 +1,28 @@
-* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/phylopomp.Rcheck'
+* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/phylopomp.Rcheck'
 * using R version 4.2.2 (2022-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * using session charset: UTF-8
 * using option '--as-cran'
 * checking for file 'phylopomp/DESCRIPTION' ... OK
 * checking extension type ... Package
-* this is package 'phylopomp' version '0.1.0.0'
+* this is package 'phylopomp' version '0.3.0.0'
 * package encoding: UTF-8
 * checking package namespace information ... OK
-* checking package dependencies ... NOTE
-Suggests orphaned package: 'doRNG'
+* checking package dependencies ... OK
 * checking if this is a source package ... OK
 * checking if there is a namespace ... OK
 * checking for executable files ... OK
 * checking for hidden files and directories ... OK
 * checking for portable file names ... OK
 * checking for sufficient/correct file permissions ... OK
-* checking whether package 'phylopomp' can be installed ... [41s/44s] OK
+* checking whether package 'phylopomp' can be installed ... [61s/42s] OK
 * checking installed package size ... NOTE
-  installed size is 15.0Mb
+  installed size is 18.3Mb
   sub-directories of 1Mb or more:
-    libs  14.1Mb
+    libs  17.5Mb
 * checking package directory ... OK
-* checking for future file timestamps ... OK
+* checking for future file timestamps ... NOTE
+unable to verify current time
 * checking DESCRIPTION meta-information ... OK
 * checking top-level files ... OK
 * checking for left-over files ... OK
@@ -41,7 +41,7 @@ Suggests orphaned package: 'doRNG'
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... [21s/11s] OK
+* checking R code for possible problems ... [52s/10s] OK
 * checking Rd files ... OK
 * checking Rd metadata ... OK
 * checking Rd line widths ... OK
@@ -56,10 +56,10 @@ Suggests orphaned package: 'doRNG'
 * checking compilation flags used ... OK
 * checking compiled code ... OK
 * checking installed files from 'inst/doc' ... OK
-* checking examples ... [13s/15s] OK
+* checking examples ... [17s/14s] OK
 * checking for unstated dependencies in 'tests' ... OK
 * checking tests ...
- [62s/47s] OK
+ [111s/52s] OK
 * checking PDF version of manual ... OK
 * checking for non-standard things in the check directory ... OK
 * checking for detritus in the temp directory ... OK
diff --git a/revdep/Outputs/check_pomp_stderr.txt b/revdep/Outputs/check_pomp_stderr.txt
index fb375fe9f..13da20935 100644
--- a/revdep/Outputs/check_pomp_stderr.txt
+++ b/revdep/Outputs/check_pomp_stderr.txt
@@ -1,4 +1,4 @@
-  Running ‘R_v_C.R’ [16s/12s]
+  Running ‘R_v_C.R’ [26s/12s]
   Running ‘abc.R’
   Comparing ‘abc.Rout’ to ‘abc.Rout.save’ ... OK
   Running ‘baddm.R’
@@ -23,9 +23,9 @@
   Comparing ‘csnippet.Rout’ to ‘csnippet.Rout.save’ ... OK
   Running ‘dacca.R’
   Comparing ‘dacca.Rout’ to ‘dacca.Rout.save’ ... OK
-  Running ‘deprecated.R’
-  Comparing ‘deprecated.Rout’ to ‘deprecated.Rout.save’ ... OK
-  Running ‘dp.R’
+  Running ‘defunct.R’
+  Comparing ‘defunct.Rout’ to ‘defunct.Rout.save’ ... OK
+  Running ‘dp.R’ [147s/12s]
   Comparing ‘dp.Rout’ to ‘dp.Rout.save’ ... OK
   Running ‘dprocess.R’
   Comparing ‘dprocess.Rout’ to ‘dprocess.Rout.save’ ... OK
@@ -39,7 +39,7 @@
   Comparing ‘flow.Rout’ to ‘flow.Rout.save’ ... OK
   Running ‘getting_started.R’
   Comparing ‘getting_started.Rout’ to ‘getting_started.Rout.save’ ... OK
-  Running ‘gillespie.R’ [19s/12s]
+  Running ‘gillespie.R’ [41s/13s]
   Comparing ‘gillespie.Rout’ to ‘gillespie.Rout.save’ ... OK
   Running ‘gompertz.R’
   Comparing ‘gompertz.Rout’ to ‘gompertz.Rout.save’ ... OK
@@ -166,7 +166,7 @@
   Comparing ‘wquant.Rout’ to ‘wquant.Rout.save’ ... OK
 
 See
-  '/home/kingaa/projects/Rpkg/pomp/revdep/pomp.Rcheck/00check.log'
+  '/userdata/kingaa/projects/Rpkg/pomp/revdep/pomp.Rcheck/00check.log'
 for details.
 
 
diff --git a/revdep/Outputs/check_pomp_stdout.txt b/revdep/Outputs/check_pomp_stdout.txt
index b5595538e..114e5dd81 100644
--- a/revdep/Outputs/check_pomp_stdout.txt
+++ b/revdep/Outputs/check_pomp_stdout.txt
@@ -1,11 +1,11 @@
-* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/pomp.Rcheck'
+* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/pomp.Rcheck'
 * using R version 4.2.2 (2022-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * using session charset: UTF-8
 * using option '--as-cran'
 * checking for file 'pomp/DESCRIPTION' ... OK
 * checking extension type ... Package
-* this is package 'pomp' version '4.5.3.0'
+* this is package 'pomp' version '4.7.0.0'
 * package encoding: UTF-8
 * checking package namespace information ... OK
 * checking package dependencies ... OK
@@ -15,10 +15,11 @@
 * checking for hidden files and directories ... OK
 * checking for portable file names ... OK
 * checking for sufficient/correct file permissions ... OK
-* checking whether package 'pomp' can be installed ... [26s/28s] OK
+* checking whether package 'pomp' can be installed ... [39s/30s] OK
 * checking installed package size ... OK
 * checking package directory ... OK
-* checking for future file timestamps ... OK
+* checking for future file timestamps ... NOTE
+unable to verify current time
 * checking DESCRIPTION meta-information ... OK
 * checking top-level files ... OK
 * checking for left-over files ... OK
@@ -34,28 +35,17 @@
 * checking loading without being on the library search path ... OK
 * checking use of S3 registration ... OK
 * checking dependencies in R code ... OK
-* checking S3 generic/method consistency ... NOTE
-Found the following apparent S3 methods exported but not registered:
-  filter.mean filter.traj
-See section 'Registering S3 methods' in the 'Writing R Extensions'
-manual.
+* checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... [29s/21s] OK
+* checking R code for possible problems ... [65s/16s] OK
 * checking Rd files ... OK
 * checking Rd metadata ... OK
 * checking Rd line widths ... OK
 * checking Rd cross-references ... OK
 * checking for missing documentation entries ... OK
 * checking for code/documentation mismatches ... OK
-* checking Rd \usage sections ... NOTE
-S3 methods shown with full name in documentation object 'deprecated':
-  ‘filter.mean’ ‘filter.traj’
-
-The \usage entries for S3 methods should use the \method markup and not
-their full name.
-See chapter 'Writing R documentation files' in the 'Writing R
-Extensions' manual.
+* checking Rd \usage sections ... OK
 * checking Rd contents ... OK
 * checking for unstated dependencies in examples ... OK
 * checking contents of 'data' directory ... OK
@@ -73,16 +63,17 @@ Extensions' manual.
 * checking compilation flags used ... OK
 * checking compiled code ... OK
 * checking installed files from 'inst/doc' ... OK
-* checking examples ... [19s/12s] OK
+* checking examples ... [49s/13s] OK
 Examples with CPU (user + system) or elapsed time > 5s
-       user system elapsed
-ebola 2.731   4.34   2.811
+        user system elapsed
+ebola  8.268 21.278   2.536
+ricker 1.910  4.997   0.573
 ** found \donttest examples: check also with --run-donttest
 * checking for unstated dependencies in 'tests' ... OK
 * checking tests ...
- [644s/193s] OK
+ [1936s/207s] OK
 * checking PDF version of manual ... OK
 * checking for non-standard things in the check directory ... OK
 * checking for detritus in the temp directory ... OK
 * DONE
-Status: 2 NOTEs
+Status: 1 NOTE
diff --git a/revdep/Outputs/check_spaero_stderr.txt b/revdep/Outputs/check_spaero_stderr.txt
index a0eec50f8..0aa87dcf8 100644
--- a/revdep/Outputs/check_spaero_stderr.txt
+++ b/revdep/Outputs/check_spaero_stderr.txt
@@ -1,7 +1,7 @@
   Running ‘testthat.R’
 
 See
-  '/home/kingaa/projects/Rpkg/pomp/revdep/spaero.Rcheck/00check.log'
+  '/userdata/kingaa/projects/Rpkg/pomp/revdep/spaero.Rcheck/00check.log'
 for details.
 
 
diff --git a/revdep/Outputs/check_spaero_stdout.txt b/revdep/Outputs/check_spaero_stdout.txt
index dc982ed4f..c76b46929 100644
--- a/revdep/Outputs/check_spaero_stdout.txt
+++ b/revdep/Outputs/check_spaero_stdout.txt
@@ -1,4 +1,4 @@
-* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/spaero.Rcheck'
+* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/spaero.Rcheck'
 * using R version 4.2.2 (2022-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * using session charset: UTF-8
@@ -18,7 +18,8 @@
 * checking whether package 'spaero' can be installed ... OK
 * checking installed package size ... OK
 * checking package directory ... OK
-* checking for future file timestamps ... OK
+* checking for future file timestamps ... NOTE
+unable to verify current time
 * checking 'build' directory ... OK
 * checking DESCRIPTION meta-information ... OK
 * checking top-level files ... OK
@@ -56,14 +57,17 @@ Namespace in Imports field not imported from: ‘utils’
 * checking installed files from 'inst/doc' ... OK
 * checking files in 'vignettes' ... OK
 * checking examples ... OK
+Examples with CPU (user + system) or elapsed time > 5s
+                  user system elapsed
+create_simulator 2.185  5.256   1.303
 * checking for unstated dependencies in 'tests' ... OK
 * checking tests ...
  OK
 * checking for unstated dependencies in vignettes ... OK
 * checking package vignettes in 'inst/doc' ... OK
-* checking re-building of vignette outputs ... [21s/20s] OK
+* checking re-building of vignette outputs ... [48s/21s] OK
 * checking PDF version of manual ... OK
 * checking for non-standard things in the check directory ... OK
 * checking for detritus in the temp directory ... OK
 * DONE
-Status: 2 NOTEs
+Status: 3 NOTEs
diff --git a/revdep/Outputs/check_spatPomp_stderr.txt b/revdep/Outputs/check_spatPomp_stderr.txt
index a85ad59b6..33bec4e5c 100644
--- a/revdep/Outputs/check_spatPomp_stderr.txt
+++ b/revdep/Outputs/check_spatPomp_stderr.txt
@@ -1,26 +1,30 @@
   Running ‘abf.R’
   Running ‘abfir.R’
   Running ‘bm.R’
-  Comparing ‘bm.Rout’ to ‘bm.Rout.save’ ...  Running ‘bm2.R’
-  Comparing ‘bm2.Rout’ to ‘bm2.Rout.save’ ...  Running ‘bpfilter.R’
+  Comparing ‘bm.Rout’ to ‘bm.Rout.save’ ... OK
+  Running ‘bm2.R’
+  Comparing ‘bm2.Rout’ to ‘bm2.Rout.save’ ... OK
+  Running ‘bpfilter.R’
   Running ‘enkf.R’
   Running ‘gbm.R’
-  Comparing ‘gbm.Rout’ to ‘gbm.Rout.save’ ...  Running ‘girf.R’
+  Comparing ‘gbm.Rout’ to ‘gbm.Rout.save’ ... OK
+  Running ‘girf.R’
   Running ‘he10.R’
-  Comparing ‘he10.Rout’ to ‘he10.Rout.save’ ...  Running ‘ibpf.R’
+  Comparing ‘he10.Rout’ to ‘he10.Rout.save’ ... OK
+  Running ‘ibpf.R’
   Running ‘ienkf.R’
   Running ‘igirf.R’
   Running ‘iter_filter.R’
-  Comparing ‘iter_filter.Rout’ to ‘iter_filter.Rout.save’ ...  Running ‘iubf.R’
+  Comparing ‘iter_filter.Rout’ to ‘iter_filter.Rout.save’ ... OK
+  Running ‘iubf.R’
   Running ‘lorenz.R’
-  Comparing ‘lorenz.Rout’ to ‘lorenz.Rout.save’ ...  Running ‘measles.R’
-  Comparing ‘measles.Rout’ to ‘measles.Rout.save’ ...  Running ‘pfilter.R’
+  Comparing ‘lorenz.Rout’ to ‘lorenz.Rout.save’ ... OK
+  Running ‘measles.R’
+  Comparing ‘measles.Rout’ to ‘measles.Rout.save’ ... OK
+  Running ‘pfilter.R’
   Running ‘plot.R’
   Running ‘simulate.R’
+  Running ‘spatPomp.R’
   Running ‘xtests.R’
 
-See
-  '/home/kingaa/projects/Rpkg/pomp/revdep/spatPomp.Rcheck/00check.log'
-for details.
-
 
diff --git a/revdep/Outputs/check_spatPomp_stdout.txt b/revdep/Outputs/check_spatPomp_stdout.txt
index 6cce72e6d..57a8d3bbf 100644
--- a/revdep/Outputs/check_spatPomp_stdout.txt
+++ b/revdep/Outputs/check_spatPomp_stdout.txt
@@ -1,22 +1,21 @@
-* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/spatPomp.Rcheck'
+* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/spatPomp.Rcheck'
 * using R version 4.2.2 (2022-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * using session charset: UTF-8
 * using option '--as-cran'
 * checking for file 'spatPomp/DESCRIPTION' ... OK
 * checking extension type ... Package
-* this is package 'spatPomp' version '0.30.2.0'
+* this is package 'spatPomp' version '0.31.0.0'
 * package encoding: UTF-8
 * checking package namespace information ... OK
-* checking package dependencies ... NOTE
-Suggests orphaned package: 'doRNG'
+* checking package dependencies ... OK
 * checking if this is a source package ... OK
 * checking if there is a namespace ... OK
 * checking for executable files ... OK
 * checking for hidden files and directories ... OK
 * checking for portable file names ... OK
 * checking for sufficient/correct file permissions ... OK
-* checking whether package 'spatPomp' can be installed ... [18s/17s] OK
+* checking whether package 'spatPomp' can be installed ... [37s/18s] OK
 * checking installed package size ... OK
 * checking package directory ... OK
 * checking for future file timestamps ... OK
@@ -38,7 +37,7 @@ Suggests orphaned package: 'doRNG'
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... [26s/20s] OK
+* checking R code for possible problems ... [57s/16s] OK
 * checking Rd files ... OK
 * checking Rd metadata ... OK
 * checking Rd line widths ... OK
@@ -59,47 +58,9 @@ Suggests orphaned package: 'doRNG'
 * checking examples ... OK
 * checking for unstated dependencies in 'tests' ... OK
 * checking tests ...
-133,136d132
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-16,19d15
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-26,29d25
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-78,81d77
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-14,17d13
-< In addition: Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-27,30d26
-< Warning message:
-< 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
-71,73c71
-< 1: 'rw.sd' is deprecated.
-< Use 'rw_sd' instead.
-< See help("Deprecated") 
----
-> 1: in 'table_lookup': extrapolating at 1.965002e+03. 
-75d72
-< 3: in 'table_lookup': extrapolating at 1.965002e+03. 
- [85s/33s] OK
+ [276s/34s] OK
 * checking PDF version of manual ... OK
 * checking for non-standard things in the check directory ... OK
 * checking for detritus in the temp directory ... OK
 * DONE
-Status: 1 NOTE
+Status: OK
diff --git a/revdep/Outputs/check_stops_stderr.txt b/revdep/Outputs/check_stops_stderr.txt
new file mode 100644
index 000000000..2e6541795
--- /dev/null
+++ b/revdep/Outputs/check_stops_stderr.txt
@@ -0,0 +1,6 @@
+
+See
+  '/userdata/kingaa/projects/Rpkg/pomp/revdep/stops.Rcheck/00check.log'
+for details.
+
+
diff --git a/revdep/Outputs/check_stops_stdout.txt b/revdep/Outputs/check_stops_stdout.txt
new file mode 100644
index 000000000..2ecfa6a65
--- /dev/null
+++ b/revdep/Outputs/check_stops_stdout.txt
@@ -0,0 +1,101 @@
+* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/stops.Rcheck'
+* using R version 4.2.2 (2022-10-31)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option '--as-cran'
+* checking for file 'stops/DESCRIPTION' ... OK
+* this is package 'stops' version '1.0-1'
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... OK
+* checking if this is a source package ... OK
+* checking if there is a namespace ... OK
+* checking for executable files ... OK
+* checking for hidden files and directories ... OK
+* checking for portable file names ... OK
+* checking for sufficient/correct file permissions ... OK
+* checking whether package 'stops' can be installed ... [39s/22s] WARNING
+Found the following significant warnings:
+  Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
+See '/userdata/kingaa/projects/Rpkg/pomp/revdep/stops.Rcheck/00install.out' for details.
+* checking installed package size ... OK
+* checking package directory ... OK
+* checking for future file timestamps ... NOTE
+unable to verify current time
+* checking 'build' directory ... OK
+* checking DESCRIPTION meta-information ... OK
+* checking top-level files ... OK
+* checking for left-over files ... OK
+* checking index information ... OK
+* checking package subdirectories ... OK
+* checking R files for non-ASCII characters ... OK
+* checking R files for syntax errors ... OK
+* checking whether the package can be loaded ... OK
+* checking whether the package can be loaded with stated dependencies ... OK
+* checking whether the package can be unloaded cleanly ... OK
+* checking whether the namespace can be loaded with stated dependencies ... OK
+* checking whether the namespace can be unloaded cleanly ... OK
+* checking loading without being on the library search path ... OK
+* checking use of S3 registration ... OK
+* checking dependencies in R code ... OK
+* checking S3 generic/method consistency ... OK
+* checking replacement functions ... OK
+* checking foreign function calls ... OK
+* checking R code for possible problems ... [64s/22s] NOTE
+bcStressMin: local variable ‘lambdaorig’ assigned but may not be used
+bcStressMin: local variable ‘t’ assigned but may not be used
+c_inequality: local variable ‘out’ assigned but may not be used
+c_linearity: local variable ‘x’ assigned but may not be used
+c_linearity: local variable ‘y’ assigned but may not be used
+conf_adjust: local variable ‘bb’ assigned but may not be used
+conf_adjust: local variable ‘cc’ assigned but may not be used
+conf_adjust: local variable ‘metric’ assigned but may not be used
+ljoptim: local variable ‘n’ assigned but may not be used
+powerStressMin: local variable ‘deltam’ assigned but may not be used
+stoploss: local variable ‘cassociation’ assigned but may not be used
+stoploss: local variable ‘cclumpiness’ assigned but may not be used
+stoploss: local variable ‘cclusteredness’ assigned but may not be used
+stoploss: local variable ‘ccomplexity’ assigned but may not be used
+stoploss: local variable ‘cconvexity’ assigned but may not be used
+stoploss: local variable ‘cdependence’ assigned but may not be used
+stoploss: local variable ‘cfaithfulness’ assigned but may not be used
+stoploss: local variable ‘cfunctionality’ assigned but may not be used
+stoploss: local variable ‘chierarchy’ assigned but may not be used
+stoploss: local variable ‘cinequality’ assigned but may not be used
+stoploss: local variable ‘clinearity’ assigned but may not be used
+stoploss: local variable ‘cmanifoldness’ assigned but may not be used
+stoploss: local variable ‘cnonmonotonicity’ assigned but may not be
+  used
+stoploss: local variable ‘coutlying’ assigned but may not be used
+stoploss: local variable ‘cregularity’ assigned but may not be used
+stoploss: local variable ‘cskinniness’ assigned but may not be used
+stoploss: local variable ‘csparsity’ assigned but may not be used
+stoploss: local variable ‘cstriatedness’ assigned but may not be used
+stoploss: local variable ‘cstringiness’ assigned but may not be used
+tgpoptim: local variable ‘fold’ assigned but may not be used
+tgpoptim: local variable ‘valsorig’ assigned but may not be used
+* checking Rd files ... OK
+* checking Rd metadata ... OK
+* checking Rd line widths ... OK
+* checking Rd cross-references ... OK
+* checking for missing documentation entries ... OK
+* checking for code/documentation mismatches ... OK
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking contents of 'data' directory ... OK
+* checking data for non-ASCII characters ... OK
+* checking LazyData ... OK
+* checking data for ASCII and uncompressed saves ... OK
+* checking installed files from 'inst/doc' ... OK
+* checking files in 'vignettes' ... OK
+* checking examples ... [32s/12s] OK
+** found \donttest examples: check also with --run-donttest
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in 'inst/doc' ... OK
+* checking re-building of vignette outputs ... OK
+* checking PDF version of manual ... OK
+* checking for non-standard things in the check directory ... OK
+* checking for detritus in the temp directory ... OK
+* DONE
+Status: 1 WARNING, 2 NOTEs
diff --git a/revdep/Outputs/install_pomp.out b/revdep/Outputs/install_pomp.out
index a2a959ec1..6150a8a15 100644
--- a/revdep/Outputs/install_pomp.out
+++ b/revdep/Outputs/install_pomp.out
@@ -2,44 +2,45 @@
 ** package 'pomp' successfully unpacked and MD5 sums checked
 ** using staged installation
 ** libs
-make[1]: Entering directory '/tmp/RtmpCaapKV/R.INSTALL463bc7d9fca2a/pomp/src'
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c bspline.c -o bspline.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c distributions.c -o distributions.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c dmeasure.c -o dmeasure.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c dprior.c -o dprior.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c dprocess.c -o dprocess.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c emeasure.c -o emeasure.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c euler.c -o euler.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c gompertz.c -o gompertz.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c init.c -o init.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c lookup_table.c -o lookup_table.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c mif2.c -o mif2.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c ou2.c -o ou2.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c partrans.c -o partrans.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c pfilter.c -o pfilter.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c pomp_fun.c -o pomp_fun.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c probe.c -o probe.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c probe_acf.c -o probe_acf.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c probe_marginal.c -o probe_marginal.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c probe_nlar.c -o probe_nlar.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c resample.c -o resample.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c rinit.c -o rinit.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c rmeasure.c -o rmeasure.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c rprior.c -o rprior.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c rprocess.c -o rprocess.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c simulate.c -o simulate.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c skeleton.c -o skeleton.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c sobolseq.c -o sobolseq.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c ssa.c -o ssa.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c synth_lik.c -o synth_lik.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c trajectory.c -o trajectory.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c transformations.c -o transformations.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c userdata.c -o userdata.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c vmeasure.c -o vmeasure.o
-gcc -I"/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c wpfilter.c -o wpfilter.o
-gcc -shared -L/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/lib -L/usr/local/lib64 -o pomp.so bspline.o distributions.o dmeasure.o dprior.o dprocess.o emeasure.o euler.o gompertz.o init.o lookup_table.o mif2.o ou2.o partrans.o pfilter.o pomp_fun.o probe.o probe_acf.o probe_marginal.o probe_nlar.o resample.o rinit.o rmeasure.o rprior.o rprocess.o simulate.o skeleton.o sobolseq.o ssa.o synth_lik.o trajectory.o transformations.o userdata.o vmeasure.o wpfilter.o -lopenblas -lgfortran -lm -lquadmath -L/usr/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/lib -lR
-make[1]: Leaving directory '/tmp/RtmpCaapKV/R.INSTALL463bc7d9fca2a/pomp/src'
-installing to /home/kingaa/projects/Rpkg/pomp/revdep/Library/00LOCK-pomp/00new/pomp/libs
+make[1]: Entering directory '/tmp/RtmpvDFUyU/R.INSTALL12a56034bbbb7a/pomp/src'
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c bspline.c -o bspline.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c distributions.c -o distributions.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c dmeasure.c -o dmeasure.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c dprior.c -o dprior.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c dprocess.c -o dprocess.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c emeasure.c -o emeasure.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c euler.c -o euler.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c gompertz.c -o gompertz.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c init.c -o init.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c logmeanexp.c -o logmeanexp.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c lookup_table.c -o lookup_table.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c mif2.c -o mif2.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c ou2.c -o ou2.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c partrans.c -o partrans.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c pfilter.c -o pfilter.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c pomp_fun.c -o pomp_fun.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c probe.c -o probe.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c probe_acf.c -o probe_acf.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c probe_marginal.c -o probe_marginal.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c probe_nlar.c -o probe_nlar.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c resample.c -o resample.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c rinit.c -o rinit.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c rmeasure.c -o rmeasure.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c rprior.c -o rprior.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c rprocess.c -o rprocess.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c simulate.c -o simulate.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c skeleton.c -o skeleton.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c sobolseq.c -o sobolseq.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c ssa.c -o ssa.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c synth_lik.c -o synth_lik.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c trajectory.c -o trajectory.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c transformations.c -o transformations.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c userdata.c -o userdata.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c vmeasure.c -o vmeasure.o
+gcc -I"/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2 -Wall -pedantic -c wpfilter.c -o wpfilter.o
+gcc -shared -L/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/lib -L/usr/local/lib64 -o pomp.so bspline.o distributions.o dmeasure.o dprior.o dprocess.o emeasure.o euler.o gompertz.o init.o logmeanexp.o lookup_table.o mif2.o ou2.o partrans.o pfilter.o pomp_fun.o probe.o probe_acf.o probe_marginal.o probe_nlar.o resample.o rinit.o rmeasure.o rprior.o rprocess.o simulate.o skeleton.o sobolseq.o ssa.o synth_lik.o trajectory.o transformations.o userdata.o vmeasure.o wpfilter.o -lopenblas -lgfortran -lm -lquadmath -L/export/local/apps/R/ubuntu_20.04/4.2.2/lib64/R/lib -lR
+make[1]: Leaving directory '/tmp/RtmpvDFUyU/R.INSTALL12a56034bbbb7a/pomp/src'
+installing to /userdata/kingaa/projects/Rpkg/pomp/revdep/Library/00LOCK-pomp/00new/pomp/libs
 ** R
 ** data
 *** moving datasets to lazyload DB
diff --git a/revdep/timings.tab b/revdep/timings.tab
index 8e5170655..66289eeec 100644
--- a/revdep/timings.tab
+++ b/revdep/timings.tab
@@ -1,11 +1,12 @@
 "user" "system" "elapsed"
-"pomp" 392.028 404.89 307.151
-"CollocInfer" 103.803 60.566 109.124
-"DTAT" 104.038 47.792 113.273
-"epimdr" 55.194 36.192 60.431
-"epimdr2" 82.492 38.441 90.247
-"spaero" 54.369 48.603 59.022
-"spatPomp" 116.423 86.342 118.998
-"circumstance" 54.185 36.651 60.18
-"panelPomp" 109.514 83.204 112.154
-"phylopomp" 149.355 53.855 158.318
+"pomp" 743.193 1541.105 321.753
+"CollocInfer" 161.205 292.515 112.611
+"DTAT" 140.707 200.122 114.102
+"epimdr" 88.085 162.526 65.857
+"epimdr2" 110.257 163.722 93.101
+"spaero" 103.242 223.48 63.409
+"spatPomp" 197.815 364.276 122.624
+"stops" 169.799 198.252 143.551
+"circumstance" 89.714 161.953 60.226
+"panelPomp" 162.96 343.948 92.688
+"phylopomp" 198.442 216.936 165.223