diff --git a/geneplexus/__init__.py b/geneplexus/__init__.py index ae58500..7ba5bb5 100644 --- a/geneplexus/__init__.py +++ b/geneplexus/__init__.py @@ -125,6 +125,7 @@ analysis *cannot* be done due to the lack to pretrained models. """ + from ._config import config # noreorder from . import download from . import util diff --git a/geneplexus/_config/__init__.py b/geneplexus/_config/__init__.py index eeb3ffe..add5578 100644 --- a/geneplexus/_config/__init__.py +++ b/geneplexus/_config/__init__.py @@ -1,4 +1,5 @@ """Basic configurations.""" + from . import config from .logger_util import make_logger diff --git a/geneplexus/_config/config.py b/geneplexus/_config/config.py index 67dd677..b697c35 100644 --- a/geneplexus/_config/config.py +++ b/geneplexus/_config/config.py @@ -1,4 +1,5 @@ """Global variables used by the GenePlexus library.""" + import os.path as osp import pathlib from typing import Any diff --git a/geneplexus/_config/logger_util.py b/geneplexus/_config/logger_util.py index 8c5933f..074a080 100644 --- a/geneplexus/_config/logger_util.py +++ b/geneplexus/_config/logger_util.py @@ -1,4 +1,5 @@ """Logger utilities.""" + import logging from contextlib import contextmanager from typing import Optional diff --git a/geneplexus/cli.py b/geneplexus/cli.py index 25116d9..9fe89ea 100644 --- a/geneplexus/cli.py +++ b/geneplexus/cli.py @@ -1,4 +1,5 @@ """Command line interface for the GenePlexus pipeline.""" + import argparse import atexit import os diff --git a/geneplexus/download.py b/geneplexus/download.py index 4bf4fa4..9d2c8ba 100755 --- a/geneplexus/download.py +++ b/geneplexus/download.py @@ -1,4 +1,5 @@ """Data download module.""" + import io import os import os.path as osp diff --git a/geneplexus/geneplexus.py b/geneplexus/geneplexus.py index 85fef23..0b42ca8 100755 --- a/geneplexus/geneplexus.py +++ b/geneplexus/geneplexus.py @@ -1,4 +1,5 @@ """GenePlexus API.""" + import os import os.path as osp import warnings diff --git a/geneplexus/util.py b/geneplexus/util.py index 5b108b5..f1289e9 100755 --- a/geneplexus/util.py +++ b/geneplexus/util.py @@ -1,4 +1,5 @@ """Utilities including file and path handling.""" + import functools import json import os