- VERSE: a versatile and efficient RNA-Seq read counting tool (2016)
- Ondov, B., Starrett, G., Sappington, A. et al. Mash Screen: high-throughput sequence containment estimation for genome discovery. Genome Biol 20, 232 (2019).
- Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design