From 8497231dcfa5ddb9fd646819650055a01aaf7899 Mon Sep 17 00:00:00 2001 From: Kyle Barron Date: Sun, 3 Sep 2023 19:55:46 -0400 Subject: [PATCH 1/2] table abstraction for arrow1 apis (#304) --- Cargo.lock | 4 +- Cargo.toml | 8 +- src/arrow1/reader.rs | 23 +- src/arrow1/wasm.rs | 31 +- src/arrow1/writer.rs | 22 +- src/arrow1/writer_properties.rs | 6 + src/bin/read_parquet.rs | 30 +- src/bin/write_parquet.rs | 42 +- tests/js/arrow1-ffi.ts | 96 +- tests/js/arrow1.ts | 24 +- yarn.lock | 4634 ++++++++++++++----------------- 11 files changed, 2229 insertions(+), 2691 deletions(-) diff --git a/Cargo.lock b/Cargo.lock index 738725f3..66fd3bca 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -261,8 +261,10 @@ dependencies = [ [[package]] name = "arrow-wasm" version = "0.1.0" -source = "git+https://github.com/kylebarron/arrow-wasm?rev=1c48ba24e98c756fd593418180c3833fc6e3a795#1c48ba24e98c756fd593418180c3833fc6e3a795" +source = "git+https://github.com/kylebarron/arrow-wasm?rev=ab0455c7dd8df31f3d4b97988f08bc34e62f2dc9#ab0455c7dd8df31f3d4b97988f08bc34e62f2dc9" dependencies = [ + "arrow", + "arrow-schema", "arrow2", "getrandom", "js-sys", diff --git a/Cargo.toml b/Cargo.toml index 108035ab..d174260c 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -16,12 +16,12 @@ crate-type = ["cdylib", "rlib"] [features] default = ["arrow1", "all_compressions", "reader", "writer"] -arrow1 = ["dep:arrow", "dep:parquet", "dep:bytes"] +arrow1 = ["dep:arrow", "dep:parquet", "dep:bytes", "arrow-wasm/arrow1"] arrow2 = [ "dep:arrow2", "dep:parquet2", "dep:serde-wasm-bindgen", - "dep:arrow-wasm", + "arrow-wasm/arrow2", ] reader = [] writer = [] @@ -76,8 +76,8 @@ js-sys = "0.3.60" getrandom = { version = "0.2.6", features = ["js"] } thiserror = "1.0" -arrow-wasm = { git = "https://github.com/kylebarron/arrow-wasm", rev = "1c48ba24e98c756fd593418180c3833fc6e3a795", optional = true } -# arrow-wasm = { path = "/Users/kyle/github/rust/arrow-wasm", optional = true } +arrow-wasm = { git = "https://github.com/kylebarron/arrow-wasm", rev = "ab0455c7dd8df31f3d4b97988f08bc34e62f2dc9" } +# arrow-wasm = { path = "/Users/kyle/github/rust/arrow-wasm" } arrow2 = { version = "0.17", optional = true, features = [ "io_ipc", diff --git a/src/arrow1/reader.rs b/src/arrow1/reader.rs index 5497a9d4..fb46b700 100644 --- a/src/arrow1/reader.rs +++ b/src/arrow1/reader.rs @@ -1,37 +1,26 @@ use crate::arrow1::error::Result; use crate::arrow1::ffi::FFIArrowTable; -use arrow::ipc::writer::StreamWriter; +use arrow_wasm::arrow1::Table; use bytes::Bytes; use parquet::arrow::arrow_reader::ParquetRecordBatchReaderBuilder; /// Internal function to read a buffer with Parquet data into a buffer with Arrow IPC Stream data /// using the arrow and parquet crates -pub fn read_parquet(parquet_file: Vec) -> Result> { +pub fn read_parquet(parquet_file: Vec) -> Result { // Create Parquet reader let cursor: Bytes = parquet_file.into(); let builder = ParquetRecordBatchReaderBuilder::try_new(cursor).unwrap(); - let arrow_schema = builder.schema().clone(); // Create Arrow reader let reader = builder.build().unwrap(); - // Create IPC Writer - let mut output_file = Vec::new(); + let mut batches = vec![]; - { - let mut writer = StreamWriter::try_new(&mut output_file, &arrow_schema)?; - - // Iterate over record batches, writing them to IPC stream - for maybe_record_batch in reader { - let record_batch = maybe_record_batch?; - writer.write(&record_batch)?; - } - writer.finish()?; + for maybe_chunk in reader { + batches.push(maybe_chunk?) } - // Note that this returns output_file directly instead of using writer.into_inner().to_vec() as - // the latter seems likely to incur an extra copy of the vec - Ok(output_file) + Ok(Table::new(batches)) } pub fn read_parquet_ffi(parquet_file: Vec) -> Result { diff --git a/src/arrow1/wasm.rs b/src/arrow1/wasm.rs index f83299ae..5ad40113 100644 --- a/src/arrow1/wasm.rs +++ b/src/arrow1/wasm.rs @@ -1,6 +1,6 @@ use crate::arrow1::error::WasmResult; -use crate::arrow1::ffi::FFIArrowTable; use crate::utils::assert_parquet_file_not_empty; +use arrow_wasm::arrow1::{RecordBatch, Table}; use wasm_bindgen::prelude::*; /// Read a Parquet file into Arrow data using the [`arrow`](https://crates.io/crates/arrow) and @@ -23,18 +23,11 @@ use wasm_bindgen::prelude::*; /// @returns Uint8Array containing Arrow data in [IPC Stream format](https://arrow.apache.org/docs/format/Columnar.html#ipc-streaming-format). To parse this into an Arrow table, pass to `tableFromIPC` in the Arrow JS bindings. #[wasm_bindgen(js_name = readParquet)] #[cfg(feature = "reader")] -pub fn read_parquet(parquet_file: Vec) -> WasmResult> { +pub fn read_parquet(parquet_file: Vec) -> WasmResult
{ assert_parquet_file_not_empty(parquet_file.as_slice())?; Ok(crate::arrow1::reader::read_parquet(parquet_file)?) } -#[wasm_bindgen(js_name = readParquetFFI)] -#[cfg(feature = "reader")] -pub fn read_parquet_ffi(parquet_file: Vec) -> WasmResult { - assert_parquet_file_not_empty(&parquet_file)?; - Ok(crate::arrow1::reader::read_parquet_ffi(parquet_file)?) -} - /// Write Arrow data to a Parquet file using the [`arrow`](https://crates.io/crates/arrow) and /// [`parquet`](https://crates.io/crates/parquet) Rust crates. /// @@ -62,32 +55,30 @@ pub fn read_parquet_ffi(parquet_file: Vec) -> WasmResult { #[wasm_bindgen(js_name = writeParquet)] #[cfg(feature = "writer")] pub fn write_parquet( - arrow_file: &[u8], + table: Table, writer_properties: Option, ) -> WasmResult> { - let writer_props = writer_properties.unwrap_or_else(|| { - crate::arrow1::writer_properties::WriterPropertiesBuilder::default().build() - }); - + let schema = table.schema().into_inner(); + let batches = table.into_inner(); Ok(crate::arrow1::writer::write_parquet( - arrow_file, - writer_props, + batches.into_iter(), + schema, + writer_properties.unwrap_or_default(), )?) } -#[wasm_bindgen(js_name = readFFIStream)] +#[wasm_bindgen(js_name = readParquetStream)] #[cfg(all(feature = "reader", feature = "async"))] -pub async fn read_ffi_stream( +pub async fn read_parquet_stream( url: String, content_length: Option, ) -> WasmResult { - use crate::arrow1::ffi::FFIArrowRecordBatch; use futures::StreamExt; let parquet_stream = crate::arrow1::reader_async::read_record_batch_stream(url, content_length).await?; let stream = parquet_stream.map(|maybe_record_batch| { let record_batch = maybe_record_batch.unwrap(); - Ok(FFIArrowRecordBatch::from(record_batch).into()) + Ok(RecordBatch::new(record_batch).into()) }); Ok(wasm_streams::ReadableStream::from_stream(stream).into_raw()) } diff --git a/src/arrow1/writer.rs b/src/arrow1/writer.rs index df4b38a4..035751a9 100644 --- a/src/arrow1/writer.rs +++ b/src/arrow1/writer.rs @@ -1,30 +1,22 @@ use crate::arrow1::error::Result; -use arrow::ipc::reader::StreamReader; +use arrow::datatypes::SchemaRef; +use arrow::record_batch::RecordBatch; use parquet::arrow::arrow_writer::ArrowWriter; -use std::io::Cursor; /// Internal function to write a buffer of data in Arrow IPC Stream format to a Parquet file using /// the arrow and parquet crates pub fn write_parquet( - arrow_file: &[u8], + batches: impl Iterator, + schema: SchemaRef, writer_properties: crate::arrow1::writer_properties::WriterProperties, ) -> Result> { - // Create IPC reader - let input_file = Cursor::new(arrow_file); - let arrow_ipc_reader = StreamReader::try_new(input_file, None)?; - let arrow_schema = arrow_ipc_reader.schema(); - // Create Parquet writer let mut output_file: Vec = vec![]; - let mut writer = ArrowWriter::try_new( - &mut output_file, - arrow_schema, - Some(writer_properties.into()), - )?; + let mut writer = + ArrowWriter::try_new(&mut output_file, schema, Some(writer_properties.into()))?; // Iterate over IPC chunks, writing each batch to Parquet - for maybe_record_batch in arrow_ipc_reader { - let record_batch = maybe_record_batch?; + for record_batch in batches { writer.write(&record_batch)?; } diff --git a/src/arrow1/writer_properties.rs b/src/arrow1/writer_properties.rs index 460f83f9..d6d0103e 100644 --- a/src/arrow1/writer_properties.rs +++ b/src/arrow1/writer_properties.rs @@ -77,6 +77,12 @@ impl From for parquet::file::properties::WriterProperties { } } +impl Default for WriterProperties { + fn default() -> Self { + WriterPropertiesBuilder::default().build() + } +} + /// Builder to create a writing configuration for `writeParquet` /// /// Call {@linkcode build} on the finished builder to create an immputable {@linkcode WriterProperties} to pass to `writeParquet` diff --git a/src/bin/read_parquet.rs b/src/bin/read_parquet.rs index b5513c86..52c62b25 100644 --- a/src/bin/read_parquet.rs +++ b/src/bin/read_parquet.rs @@ -1,8 +1,8 @@ use clap::Parser; -use parquet_wasm::arrow1::reader::read_parquet; -use std::fs; +// use parquet_wasm::arrow1::reader::read_parquet; +// use std::fs; use std::path::PathBuf; -use std::process; +// use std::process; #[derive(Parser, Debug)] #[clap(author, version, about, long_about = None)] @@ -17,19 +17,19 @@ struct Args { } fn main() { - let args = Args::parse(); + // let args = Args::parse(); - // Read file to buffer - let data = fs::read(&args.input_file).expect("Unable to read file"); + // // Read file to buffer + // let data = fs::read(&args.input_file).expect("Unable to read file"); - // Call read_parquet - let arrow_ipc = read_parquet(data) - .map_err(|err| { - eprintln!("Could not read parquet file: {}", err); - process::exit(1); - }) - .unwrap(); + // // Call read_parquet + // let arrow_ipc = read_parquet(data) + // .map_err(|err| { + // eprintln!("Could not read parquet file: {}", err); + // process::exit(1); + // }) + // .unwrap(); - // Write result to file - fs::write(&args.output_file, arrow_ipc).expect("Unable to write file"); + // // Write result to file + // fs::write(&args.output_file, arrow_ipc).expect("Unable to write file"); } diff --git a/src/bin/write_parquet.rs b/src/bin/write_parquet.rs index c9cc5da3..1cd0dcf4 100644 --- a/src/bin/write_parquet.rs +++ b/src/bin/write_parquet.rs @@ -1,10 +1,10 @@ use clap::Parser; -use parquet_wasm::arrow1::writer::write_parquet; -use parquet_wasm::arrow1::writer_properties::WriterPropertiesBuilder; -use parquet_wasm::common::writer_properties::Compression; -use std::fs; +// use parquet_wasm::arrow1::writer::write_parquet; +// use parquet_wasm::arrow1::writer_properties::WriterPropertiesBuilder; +// use parquet_wasm::common::writer_properties::Compression; +// use std::fs; use std::path::PathBuf; -use std::process; +// use std::process; /// Simple program to greet a person #[derive(Parser, Debug)] @@ -20,24 +20,24 @@ struct Args { } fn main() { - let args = Args::parse(); + // let args = Args::parse(); - // Read file to buffer - let data = fs::read(&args.input_file).expect("Unable to read file"); - let slice = data.as_slice(); + // // Read file to buffer + // let data = fs::read(&args.input_file).expect("Unable to read file"); + // let slice = data.as_slice(); - // Call read_parquet - let writer_properties = WriterPropertiesBuilder::new() - .set_compression(Compression::SNAPPY) - .build(); + // // Call read_parquet + // let writer_properties = WriterPropertiesBuilder::new() + // .set_compression(Compression::SNAPPY) + // .build(); - let arrow_ipc = write_parquet(slice, writer_properties) - .map_err(|err| { - eprintln!("Could not write parquet file: {}", err); - process::exit(1); - }) - .unwrap(); + // let arrow_ipc = write_parquet(slice, writer_properties) + // .map_err(|err| { + // eprintln!("Could not write parquet file: {}", err); + // process::exit(1); + // }) + // .unwrap(); - // Write result to file - fs::write(&args.output_file, arrow_ipc).expect("Unable to write file"); + // // Write result to file + // fs::write(&args.output_file, arrow_ipc).expect("Unable to write file"); } diff --git a/tests/js/arrow1-ffi.ts b/tests/js/arrow1-ffi.ts index 879021be..d4174c21 100644 --- a/tests/js/arrow1-ffi.ts +++ b/tests/js/arrow1-ffi.ts @@ -2,7 +2,11 @@ import * as test from "tape"; import * as wasm from "../../pkg/node/arrow1"; import { readFileSync } from "fs"; import * as arrow from "apache-arrow"; -import { testArrowTablesEqual, readExpectedArrowData, temporaryServer } from "./utils"; +import { + testArrowTablesEqual, + readExpectedArrowData, + temporaryServer, +} from "./utils"; import { parseRecordBatch } from "arrow-js-ffi"; // Path from repo root @@ -12,50 +16,52 @@ const dataDir = "tests/data"; const WASM_MEMORY: WebAssembly.Memory = wasm.__wasm.memory; test("read via FFI", async (t) => { - const expectedTable = readExpectedArrowData(); - - const dataPath = `${dataDir}/1-partition-brotli.parquet`; - const buffer = readFileSync(dataPath); - const arr = new Uint8Array(buffer); - const ffiTable = wasm.readParquetFFI(arr); - - const batches: arrow.RecordBatch[] = []; - for (let i = 0; i < ffiTable.numBatches(); i++) { - const recordBatch = parseRecordBatch( - WASM_MEMORY.buffer, - ffiTable.arrayAddr(i), - ffiTable.schemaAddr(), - true - ); - batches.push(recordBatch); - } - - const initialTable = new arrow.Table(batches); - testArrowTablesEqual(t, expectedTable, initialTable); - t.end(); + const expectedTable = readExpectedArrowData(); + + const dataPath = `${dataDir}/1-partition-brotli.parquet`; + const buffer = readFileSync(dataPath); + const arr = new Uint8Array(buffer); + const ffiTable = wasm.readParquet(arr).intoFFI(); + + const batches: arrow.RecordBatch[] = []; + for (let i = 0; i < ffiTable.numBatches(); i++) { + const recordBatch = parseRecordBatch( + WASM_MEMORY.buffer, + ffiTable.arrayAddr(i), + ffiTable.schemaAddr(), + true + ); + batches.push(recordBatch); + } + + const initialTable = new arrow.Table(batches); + testArrowTablesEqual(t, expectedTable, initialTable); + t.end(); }); test("read file stream", async (t) => { - const server = await temporaryServer(); - const listeningPort = server.addresses()[0].port; - const rootUrl = `http://localhost:${listeningPort}`; - - const expectedTable = readExpectedArrowData(); - - const url = `${rootUrl}/1-partition-brotli.parquet`; - const stream = await wasm.readFFIStream(url) as unknown as wasm.FFIArrowRecordBatch[]; - const batches = [] - for await (const ffiTable of stream) { - const recordBatch = parseRecordBatch( - WASM_MEMORY.buffer, - ffiTable.arrayAddr(), - ffiTable.schemaAddr(), - true - ); - batches.push(recordBatch); - } - const initialTable = new arrow.Table(batches); - testArrowTablesEqual(t, expectedTable, initialTable); - await server.close(); - -}) \ No newline at end of file + const server = await temporaryServer(); + const listeningPort = server.addresses()[0].port; + const rootUrl = `http://localhost:${listeningPort}`; + + const expectedTable = readExpectedArrowData(); + + const url = `${rootUrl}/1-partition-brotli.parquet`; + const stream = (await wasm.readParquetStream( + url + )) as unknown as wasm.RecordBatch[]; + const batches = []; + for await (const table of stream) { + const ffiTable = table.intoFFI(); + const recordBatch = parseRecordBatch( + WASM_MEMORY.buffer, + ffiTable.arrayAddr(), + ffiTable.schemaAddr(), + true + ); + batches.push(recordBatch); + } + const initialTable = new arrow.Table(batches); + testArrowTablesEqual(t, expectedTable, initialTable); + await server.close(); +}); diff --git a/tests/js/arrow1.ts b/tests/js/arrow1.ts index 1297a618..d65fc663 100644 --- a/tests/js/arrow1.ts +++ b/tests/js/arrow1.ts @@ -27,7 +27,7 @@ test("read file", async (t) => { for (const testFile of testFiles) { const dataPath = `${dataDir}/${testFile}`; const arr = new Uint8Array(readFileSync(dataPath)); - const table = tableFromIPC(wasm.readParquet(arr)); + const table = tableFromIPC(wasm.readParquet(arr).intoIPC()); testArrowTablesEqual(t, expectedTable, table); } @@ -38,28 +38,30 @@ test("read-write-read round trip (with writer properties)", async (t) => { const dataPath = `${dataDir}/1-partition-brotli.parquet`; const buffer = readFileSync(dataPath); const arr = new Uint8Array(buffer); - const initialTable = tableFromIPC(wasm.readParquet(arr)); + const initialTable = tableFromIPC(wasm.readParquet(arr).intoIPC()); const writerProperties = new wasm.WriterPropertiesBuilder().build(); const parquetBuffer = wasm.writeParquet( - tableToIPC(initialTable, "stream"), + wasm.Table.fromIPC(tableToIPC(initialTable, "stream")), writerProperties ); - const table = tableFromIPC(wasm.readParquet(parquetBuffer)); + const table = tableFromIPC(wasm.readParquet(parquetBuffer).intoIPC()); testArrowTablesEqual(t, initialTable, table); t.end(); }); -test("read-write-read round trip (no writer properties provided)", async (t) => { +test("read-write-read round trip (no writer properties provided)", async (t) => { const dataPath = `${dataDir}/1-partition-brotli.parquet`; const buffer = readFileSync(dataPath); const arr = new Uint8Array(buffer); - const initialTable = tableFromIPC(wasm.readParquet(arr)); + const initialTable = tableFromIPC(wasm.readParquet(arr).intoIPC()); - const parquetBuffer = wasm.writeParquet(tableToIPC(initialTable, "stream")); - const table = tableFromIPC(wasm.readParquet(parquetBuffer)); + const parquetBuffer = wasm.writeParquet( + wasm.Table.fromIPC(tableToIPC(initialTable, "stream")) + ); + const table = tableFromIPC(wasm.readParquet(parquetBuffer).intoIPC()); testArrowTablesEqual(t, initialTable, table); t.end(); @@ -72,7 +74,11 @@ test("error produced trying to read file with arrayBuffer", (t) => { wasm.readParquet(arrayBuffer); } catch (err) { t.ok(err instanceof Error, "err expected to be an Error"); - t.equals(err.message, "Empty input provided or not a Uint8Array.", "Expected error message"); + t.equals( + err.message, + "Empty input provided or not a Uint8Array.", + "Expected error message" + ); } t.end(); diff --git a/yarn.lock b/yarn.lock index 52ed3c23..b9c1f0e1 100644 --- a/yarn.lock +++ b/yarn.lock @@ -1,2544 +1,2090 @@ -# This file is generated by running "yarn install" inside your project. -# Manual changes might be lost - 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"https://registry.yarnpkg.com/yocto-queue/-/yocto-queue-0.1.0.tgz#0294eb3dee05028d31ee1a5fa2c556a6aaf10a1b" + integrity sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q== From c14a39a0c4e43d6140a6d4894c35c0bfd606811e Mon Sep 17 00:00:00 2001 From: Kyle Barron Date: Sun, 3 Sep 2023 20:18:09 -0400 Subject: [PATCH 2/2] Bump version to 0.5.0-alpha.1 (#306) Bump version --- Cargo.lock | 2 +- Cargo.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/Cargo.lock b/Cargo.lock index 66fd3bca..cb7dcca9 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -1230,7 +1230,7 @@ dependencies = [ [[package]] name = "parquet-wasm" -version = "0.4.0" +version = "0.5.0-alpha.1" dependencies = [ "arrow", "arrow-wasm", diff --git a/Cargo.toml b/Cargo.toml index d174260c..fe4c1082 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "parquet-wasm" -version = "0.4.0" +version = "0.5.0-alpha.1" authors = ["Kyle Barron "] edition = "2021" description = "WebAssembly Parquet reader and writer."