Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Allow other output formats (e.g., AnnData) #39

Open
ArtemSokolov opened this issue May 5, 2022 · 0 comments
Open

Allow other output formats (e.g., AnnData) #39

ArtemSokolov opened this issue May 5, 2022 · 0 comments

Comments

@ArtemSokolov
Copy link
Collaborator

Introduce a new parameter --output-format that allows users to control how the output will be written. By default, it can be CSV for simple cases (e.g., one mask, one metric) and AnnData for more complex processing (e.g., multiple masks/metrics, with and without background subtraction, with and without log transformation, etc.)
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
Multiplexed Image Analysis
Status: Planning
Milestone
No milestone
Development

No branches or pull requests
1 participant
@ArtemSokolov