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26 Open 229 Closed
26 Open 229 Closed
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Issues list

Issue with Exomiser Run
#263 opened Nov 11, 2024 by poddarharsh15
AnnotSV: raise ValueError( ValueError: Each variant is assumed to only have one single line of 'full' annotation
#262 opened Oct 17, 2024 by cdbope
Invalid VCF according to VCF specification VariantConvert vcf output
#261 opened Oct 9, 2024 by aligogon
2
Information about Merged VCFs samples run from trios
#260 opened Sep 30, 2024 by poddarharsh15
2
promblem in web serve of annotsv help wanted Extra attention is needed
#259 opened Sep 26, 2024 by lpsyy
4
mm10
#257 opened Sep 24, 2024 by bioinfomatio
1
Invalid record in file : BED format help wanted Extra attention is needed
#256 opened Sep 12, 2024 by v-lakhujani
1
AnnotSV BioConda Environment: Reference Issues For GRCh38 bug Something isn't working Docker/Singularity/Bioconda help wanted Extra attention is needed
#255 opened Sep 6, 2024 by yr542
14
issue with annotation of input vcf file bug Something isn't working
#254 opened Sep 6, 2024 by dasn588
7
AnnotSV passing wrong arguments to variant convert bug Something isn't working Docker/Singularity/Bioconda
#246 opened Jul 10, 2024 by GACGAMA
5
vcf errors bug Something isn't working VariantConvert
#245 opened Jul 10, 2024 by gevro
1
custom bed annotation. overlap within n bases
#240 opened Jun 28, 2024 by blaverty
2
New long-read population reference new annotation requested
#237 opened Jun 11, 2024 by gevro
1
Unusual large memory needed for very large sized coupled BNDs bug Something isn't working help wanted Extra attention is needed square-bracketed SV notation Relies on the variant-extractor tool (Rodrigo Martín), https://github.com/EUCANCan/variant-extractor
#232 opened Apr 26, 2024 by jamigo
4
How to rank/prioritize inversions? ranking
#223 opened Mar 21, 2024 by lgmgeo
7
AnnotSV structural variant chromosome start/stop position does not match VCF file position help wanted Extra attention is needed
#217 opened Mar 6, 2024 by mxiong2
2
Issue for VCF conversion when two translocations start from the same position VariantConvert
#212 opened Feb 20, 2024 by nvnieuwk
2
Family-based filtering new functionality requested
#205 opened Dec 1, 2023 by paolomaccallini-hub
1
Conda (and container) version of AnnotSV runs into error when run with -hpo arg bug Something isn't working Docker/Singularity/Bioconda
#195 opened Sep 6, 2023 by ManavalanG
27
AnnotSV Singularity on an HPC Error command not found Docker/Singularity/Bioconda
#184 opened Jun 13, 2023 by yr542
24
Using CHM13 as a reference annotation generation Processing downloaded annotation files into the AnnotSV expected format enhancement New feature or request new annotation requested
#164 opened Mar 27, 2023 by steven-solar
10
exomiser error occurs when submits multiple jobs enhancement New feature or request HPO Exomiser / PhenoGenius
#72 opened Dec 7, 2021 by Jihoon-Yoon
1
Rank 2 always missing in ACMG_class column enhancement New feature or request ranking
#38 opened Feb 4, 2021 by ManavalanG
1
No releases available - Exomiser update documentation Improvements or additions to documentation enhancement New feature or request HPO Exomiser / PhenoGenius
#25 opened Sep 29, 2020 by pneerincx p
8
AnnotSV implementation in Python enhancement New feature or request
#23 opened Aug 24, 2020 by lgmgeo
6
ProTip! Exclude everything labeled bug with -label:bug.