diff --git a/linc_convert/utils/zarr.py b/linc_convert/utils/zarr.py index 5127a480..829463a0 100644 --- a/linc_convert/utils/zarr.py +++ b/linc_convert/utils/zarr.py @@ -9,7 +9,6 @@ # externals import nibabel as nib - import numcodecs import numcodecs.abc import numpy as np diff --git a/scripts/oct_mat_to_zarr.py b/scripts/oct_mat_to_zarr.py index a2ff53e5..18f645fb 100644 --- a/scripts/oct_mat_to_zarr.py +++ b/scripts/oct_mat_to_zarr.py @@ -20,7 +20,7 @@ from contextlib import contextmanager from functools import wraps from itertools import product -from typing import Optional, List +from typing import List, Optional from warnings import warn import cyclopts @@ -29,10 +29,14 @@ import numpy as np import zarr from scipy.io import loadmat - from utils import ( - ceildiv, make_compressor, convert_unit, to_ome_unit, to_nifti_unit, - orientation_to_affine, center_affine + ceildiv, + center_affine, + convert_unit, + make_compressor, + orientation_to_affine, + to_nifti_unit, + to_ome_unit, ) app = cyclopts.App(help_format="markdown") @@ -104,7 +108,6 @@ def convert( center Set RAS[0, 0, 0] at FOV center """ - if isinstance(compressor_opt, str): compressor_opt = ast.literal_eval(compressor_opt) diff --git a/scripts/utils.py b/scripts/utils.py index 88d6ff55..cb2c0e1c 100644 --- a/scripts/utils.py +++ b/scripts/utils.py @@ -1,4 +1,5 @@ import math + import numcodecs import numpy as np