From 6e4c150e2ea1d942d7bc29f463037eafc066cec7 Mon Sep 17 00:00:00 2001 From: Sujay Patil Date: Wed, 1 Mar 2023 14:36:49 -0800 Subject: [PATCH 1/2] avoid duplicate class names in domain_of slot --- linkml_runtime/utils/schemaview.py | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/linkml_runtime/utils/schemaview.py b/linkml_runtime/utils/schemaview.py index 8abe0786..7d7a488a 100644 --- a/linkml_runtime/utils/schemaview.py +++ b/linkml_runtime/utils/schemaview.py @@ -1230,7 +1230,8 @@ def induced_slot(self, slot_name: SLOT_NAME, class_name: CLASS_NAME = None, impo induced_slot.alias = underscore(slot_name) for c in self.all_classes().values(): if induced_slot.name in c.slots or induced_slot.name in c.attributes: - induced_slot.domain_of.append(c.name) + if c.name not in induced_slot.domain_of: + induced_slot.domain_of.append(c.name) return deepcopy(induced_slot) @lru_cache() @@ -1592,7 +1593,7 @@ def delete_type(self, type_name: TypeDefinitionName) -> None: :param type_name: type to be deleted :return: """ - del self.schema.typees[type_name] + del self.schema.types[type_name] self.set_modified() def delete_subset(self, subset_name: SubsetDefinitionName) -> None: @@ -1723,4 +1724,4 @@ def materialize_derived_schema(self) -> SchemaDefinition: derived_schema.subsets[subset.name] = subset for enum in [deepcopy(e) for e in self.all_enums().values()]: derived_schema.enums[enum.name] = enum - return derived_schema + return derived_schema \ No newline at end of file From 8ff4bdc3757b63488a3df084a12ff1d082a83b1c Mon Sep 17 00:00:00 2001 From: Sujay Patil Date: Thu, 2 Mar 2023 13:34:36 -0800 Subject: [PATCH 2/2] updated poetry.lock file --- poetry.lock | 821 +++++++++++++++++++++++++++++----------------------- 1 file changed, 460 insertions(+), 361 deletions(-) diff --git a/poetry.lock b/poetry.lock index c8be3afb..2a37a048 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,35 +1,133 @@ +# This file is automatically @generated by Poetry 1.4.0 and should not be changed by hand. + [[package]] name = "attrs" -version = "22.1.0" +version = "22.2.0" description = "Classes Without Boilerplate" category = "main" optional = false -python-versions = ">=3.5" +python-versions = ">=3.6" +files = [ + {file = "attrs-22.2.0-py3-none-any.whl", hash = "sha256:29e95c7f6778868dbd49170f98f8818f78f3dc5e0e37c0b1f474e3561b240836"}, + {file = "attrs-22.2.0.tar.gz", hash = "sha256:c9227bfc2f01993c03f68db37d1d15c9690188323c067c641f1a35ca58185f99"}, +] [package.extras] -dev = ["cloudpickle", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "mypy (>=0.900,!=0.940)", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "sphinx", "sphinx-notfound-page", "zope.interface"] -docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"] -tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "zope.interface"] -tests-no-zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"] +cov = ["attrs[tests]", "coverage-enable-subprocess", "coverage[toml] (>=5.3)"] +dev = ["attrs[docs,tests]"] +docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope.interface"] +tests = ["attrs[tests-no-zope]", "zope.interface"] +tests-no-zope = ["cloudpickle", "cloudpickle", "hypothesis", "hypothesis", "mypy (>=0.971,<0.990)", "mypy (>=0.971,<0.990)", "pympler", "pympler", "pytest (>=4.3.0)", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-mypy-plugins", "pytest-xdist[psutil]", "pytest-xdist[psutil]"] [[package]] name = "certifi" -version = "2022.9.24" +version = "2022.12.7" description = "Python package for providing Mozilla's CA Bundle." category = "main" optional = false python-versions = ">=3.6" +files = [ + {file = "certifi-2022.12.7-py3-none-any.whl", hash = "sha256:4ad3232f5e926d6718ec31cfc1fcadfde020920e278684144551c91769c7bc18"}, + {file = "certifi-2022.12.7.tar.gz", hash = "sha256:35824b4c3a97115964b408844d64aa14db1cc518f6562e8d7261699d1350a9e3"}, +] [[package]] name = "charset-normalizer" -version = "2.1.1" +version = "3.0.1" description = "The Real First Universal Charset Detector. 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