Merge pull request #54 from linkml/lmlm-model

linkml-model 1.0.5

linkml_runtime/linkml_model/annotations.py

@@ -1,5 +1,5 @@
 # Auto generated from annotations.yaml by pythongen.py version: 0.9.0
-# Generation date: 2021-08-19 17:51
+# Generation date: 2021-09-24 02:32
 # Schema: annotations
 #
 # id: https://w3id.org/linkml/annotations

linkml_runtime/linkml_model/extensions.py

@@ -1,5 +1,5 @@
 # Auto generated from extensions.yaml by pythongen.py version: 0.9.0
-# Generation date: 2021-08-19 17:51
+# Generation date: 2021-09-24 02:32
 # Schema: extensions
 #
 # id: https://w3id.org/linkml/extensions

linkml_runtime/linkml_model/graphql/meta.graphql

@@ -20,6 +20,7 @@ type Annotation implements Annotatable
 type ClassDefinition
   {
     name: String!
+    title: String
     idPrefixes: [Ncname]
     definitionUri: Uriorcurie
     aliases: [String]
@@ -87,6 +88,7 @@ interface CommonMetadata
 interface Definition
   {
     name: String!
+    title: String
     idPrefixes: [Ncname]
     definitionUri: Uriorcurie
     aliases: [String]
@@ -129,6 +131,7 @@ interface Definition
 type Element implements Extensible, Annotatable, CommonMetadata
   {
     name: String!
+    title: String
     idPrefixes: [Ncname]
     definitionUri: Uriorcurie
     aliases: [String]
@@ -159,6 +162,7 @@ type Element implements Extensible, Annotatable, CommonMetadata
 type EnumDefinition
   {
     name: String!
+    title: String
     idPrefixes: [Ncname]
     definitionUri: Uriorcurie
     aliases: [String]
@@ -246,6 +250,7 @@ type Prefix
 
 type SchemaDefinition
   {
+    title: String
     idPrefixes: [Ncname]
     definitionUri: Uriorcurie
     aliases: [String]
@@ -272,7 +277,6 @@ type SchemaDefinition
     deprecatedElementHasExactReplacement: Uriorcurie
     deprecatedElementHasPossibleReplacement: Uriorcurie
     id: Uri!
-    title: String
     version: String
     imports: [Uriorcurie]
     license: String
@@ -297,6 +301,7 @@ type SchemaDefinition
 type SlotDefinition
   {
     name: String!
+    title: String
     idPrefixes: [Ncname]
     definitionUri: Uriorcurie
     aliases: [String]
@@ -367,6 +372,7 @@ type SlotDefinition
 type SubsetDefinition
   {
     name: String!
+    title: String
     idPrefixes: [Ncname]
     definitionUri: Uriorcurie
     aliases: [String]
@@ -397,6 +403,7 @@ type SubsetDefinition
 type TypeDefinition
   {
     name: String!
+    title: String
     idPrefixes: [Ncname]
     definitionUri: Uriorcurie
     aliases: [String]
@@ -426,6 +433,7 @@ type TypeDefinition
     base: String
     uri: Uriorcurie
     repr: String
+    pattern: String
   }
 
 type UniqueKey implements Extensible, Annotatable

linkml_runtime/linkml_model/json/annotations.json

@@ -316,9 +316,9 @@
   ],
   "metamodel_version": "1.7.0",
   "source_file": "annotations.yaml",
-  "source_file_date": "Thu Aug 19 17:49:00 2021",
+  "source_file_date": "Fri Sep 24 02:29:20 2021",
   "source_file_size": 833,
-  "generation_date": "2021-08-19 17:50",
+  "generation_date": "2021-09-24 02:30",
   "@type": "SchemaDefinition",
   "@context": [
     "https://w3id.org/linkml/types.context.jsonld",

linkml_runtime/linkml_model/json/extensions.json

@@ -260,9 +260,9 @@
   ],
   "metamodel_version": "1.7.0",
   "source_file": "extensions.yaml",
-  "source_file_date": "Thu Aug 19 17:49:00 2021",
+  "source_file_date": "Fri Sep 24 02:29:20 2021",
   "source_file_size": 1043,
-  "generation_date": "2021-08-19 17:50",
+  "generation_date": "2021-09-24 02:31",
   "@type": "SchemaDefinition",
   "@context": [
     "https://w3id.org/linkml/types.context.jsonld",

linkml_runtime/linkml_model/json/mappings.json

@@ -205,7 +205,7 @@
       "name": "mappings",
       "definition_uri": "https://w3id.org/linkml/mappings",
       "mappings": [
-        "skos:mappingRelation"
+        "http://www.w3.org/2004/02/skos/core#mappingRelation"
       ],
       "description": "A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective.",
       "from_schema": "https://w3id.org/linkml/mappings",
@@ -218,7 +218,7 @@
       "name": "exact_mappings",
       "definition_uri": "https://w3id.org/linkml/exact_mappings",
       "mappings": [
-        "skos:exactMatch"
+        "http://www.w3.org/2004/02/skos/core#exactMatch"
       ],
       "description": "A list of terms from different schemas or terminology systems that have identical meaning.",
       "from_schema": "https://w3id.org/linkml/mappings",
@@ -232,7 +232,7 @@
       "name": "close_mappings",
       "definition_uri": "https://w3id.org/linkml/close_mappings",
       "mappings": [
-        "skos:closeMatch"
+        "http://www.w3.org/2004/02/skos/core#closeMatch"
       ],
       "description": "A list of terms from different schemas or terminology systems that have close meaning.",
       "from_schema": "https://w3id.org/linkml/mappings",
@@ -246,7 +246,7 @@
       "name": "related_mappings",
       "definition_uri": "https://w3id.org/linkml/related_mappings",
       "mappings": [
-        "skos:relatedMatch"
+        "http://www.w3.org/2004/02/skos/core#relatedMatch"
       ],
       "description": "A list of terms from different schemas or terminology systems that have related meaning.",
       "from_schema": "https://w3id.org/linkml/mappings",
@@ -260,7 +260,7 @@
       "name": "narrow_mappings",
       "definition_uri": "https://w3id.org/linkml/narrow_mappings",
       "mappings": [
-        "skos:narrowMatch"
+        "http://www.w3.org/2004/02/skos/core#narrowMatch"
       ],
       "description": "A list of terms from different schemas or terminology systems that have narrower meaning.",
       "from_schema": "https://w3id.org/linkml/mappings",
@@ -274,7 +274,7 @@
       "name": "broad_mappings",
       "definition_uri": "https://w3id.org/linkml/broad_mappings",
       "mappings": [
-        "skos:broadMatch"
+        "http://www.w3.org/2004/02/skos/core#broadMatch"
       ],
       "description": "A list of terms from different schemas or terminology systems that have broader meaning.",
       "from_schema": "https://w3id.org/linkml/mappings",
@@ -288,7 +288,7 @@
       "name": "deprecated_element_has_exact_replacement",
       "definition_uri": "https://w3id.org/linkml/deprecated_element_has_exact_replacement",
       "mappings": [
-        "IAO:0100001"
+        "http://purl.obolibrary.org/obo/IAO_0100001"
       ],
       "description": "When an element is deprecated, it can be automatically replaced by this uri or curie",
       "from_schema": "https://w3id.org/linkml/mappings",
@@ -300,7 +300,7 @@
       "name": "deprecated_element_has_possible_replacement",
       "definition_uri": "https://w3id.org/linkml/deprecated_element_has_possible_replacement",
       "mappings": [
-        "OIO:consider"
+        "http://www.geneontology.org/formats/oboInOwl#consider"
       ],
       "description": "When an element is deprecated, it can be potentially replaced by this uri or curie",
       "from_schema": "https://w3id.org/linkml/mappings",
@@ -311,9 +311,9 @@
   ],
   "metamodel_version": "1.7.0",
   "source_file": "mappings.yaml",
-  "source_file_date": "Thu Aug 19 17:49:00 2021",
+  "source_file_date": "Fri Sep 24 02:29:20 2021",
   "source_file_size": 2656,
-  "generation_date": "2021-08-19 17:50",
+  "generation_date": "2021-09-24 02:30",
   "@type": "SchemaDefinition",
   "@context": [
     "https://w3id.org/linkml/types.context.jsonld",