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AppUtils.cpp
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#include "HIN_Graph.h"
#include "AppUtils.h"
#include "TopKCalculator.h"
#include "CommonUtils.h"
#include <cstring>
#include <vector>
#include <map>
#include <ctime>
#include <iostream>
#include <fstream>
using namespace std;
HIN_Graph loadYagoGraph(map<int,string> & node_name, map<int, vector<Edge>> & adj, map<int,string> & node_type_name, map<int,int> & node_type_num, map<int,vector<int>> & node_id_to_type, map<int,string> & edge_name) {
clock_t t1, t2, t3;
t1 = clock();
YagoReader::readADJ("YAGO/yagoadj.txt", adj);
YagoReader::readNodeName("YAGO/yagoTaxID.txt",node_name,node_type_name);
//YagoReader::readNodeTypeNum("YAGO/yagoTypeNum.txt", node_type_num);
YagoReader::readNodeIdToType("YAGO/totalType.txt", node_id_to_type);
YagoReader::readEdgeName("YAGO/yagoType.txt",edge_name);
t2 = clock();
cerr << "Take " << (0.0 + t2 - t1)/CLOCKS_PER_SEC << "s to read Yago dataset" << endl;
HIN_Graph Yago_Graph;
Yago_Graph.buildYAGOGraph(node_name, adj, node_type_name, node_type_num, node_id_to_type, edge_name);
t3 = clock();
cerr << "Take " << (0.0 + t3 - t2)/CLOCKS_PER_SEC << "s to build Yago graph" << endl;
return Yago_Graph;
}
HIN_Graph loadDBLPGraph(map<int,string> & node_name, map<int, vector<Edge>> & adj, map<int,string> & node_type_name, map<int,int> & node_type_num, map<int,vector<int>> & node_id_to_type, map<int,string> & edge_name) {
clock_t t1, t2, t3;
t1 = clock();
YagoReader::readADJ("DBLP/dblpAdj.txt", adj);
YagoReader::readNodeIdToType("DBLP/dblpTotalType.txt", node_id_to_type);
YagoReader::readEdgeName("DBLP/dblpType.txt",edge_name);
t2 = clock();
cerr << "Take " << (0.0 + t2 - t1)/CLOCKS_PER_SEC << "s to read DBLP dataset" << endl;
HIN_Graph DBLP_Graph;
DBLP_Graph.buildYAGOGraph(node_name, adj, node_type_name, node_type_num, node_id_to_type, edge_name);
t3 = clock();
cerr << "Take " << (0.0 + t3 - t2)/CLOCKS_PER_SEC << "s to construct DBLP graph" << endl;
return DBLP_Graph;
}
HIN_Graph loadACMGraph(map<int,string> & node_name, map<int, vector<Edge>> & adj, map<int,string> & node_type_name, map<int,int> & node_type_num, map<int,vector<int>> & node_id_to_type, map<int,string> & edge_name) {
clock_t t1, t2, t3;
t1 = clock();
YagoReader::readADJ("ACM/ACMAdj.txt", adj);
YagoReader::readNodeName("ACM/ACMEntityName.txt", node_name, node_type_name);
YagoReader::readNodeIdToType("ACM/ACMEntityType.txt", node_id_to_type);
YagoReader::readEdgeName("ACM/ACMEdgeType.txt",edge_name);
t2 = clock();
cerr << "Take " << (0.0 + t2 - t1)/CLOCKS_PER_SEC << "s to read ACM dataset" << endl;
HIN_Graph ACM_Graph;
ACM_Graph.buildYAGOGraph(node_name, adj, node_type_name, node_type_num, node_id_to_type, edge_name);
t3 = clock();
cerr << "Take " << (0.0 + t3 - t2)/CLOCKS_PER_SEC << "s to construct ACM graph" << endl;
return ACM_Graph;
}
HIN_Graph loadHinGraph(const char* dataset, map<int,string> & node_name, map<int, vector<Edge>> & adj, map<int,string> & node_type_name, map<int,int> & node_type_num, map<int,vector<int>> & node_id_to_type, map<int,string> & edge_name){
if(strcmp(dataset, "ACM") == 0){
return loadACMGraph(node_name, adj, node_type_name, node_type_num, node_id_to_type, edge_name);
}else if(strcmp(dataset, "DBLP") == 0){
return loadDBLPGraph(node_name, adj, node_type_name, node_type_num, node_id_to_type, edge_name);
}else if(strcmp(dataset, "YAGO") == 0){
return loadYagoGraph(node_name, adj, node_type_name, node_type_num, node_id_to_type, edge_name);
}else{
cerr << "Unsupported dataset" << endl;
return HIN_Graph ();
}
}
void loadMetaInfo(string dataset, HIN_Graph & hin_graph_, string inDir){
string line;
map<int, int> nodeTypeNum;
ifstream nodeTypeNumIn((inDir + dataset + DEFAULT_CACHE_NODE_TYPE_NUM_FILE_SUFFIX).c_str(), ios::in);
while(getline(nodeTypeNumIn, line)){
vector<string> strs = split(line, "\t");
int node_type = atoi(strs[0].c_str());
int node_type_num = atoi(strs[1].c_str());
nodeTypeNum[node_type] = node_type_num;
}
nodeTypeNumIn.close();
map<int, int> edgeTypeNum;
ifstream edgeTypeNumIn((inDir + dataset + DEFAULT_CACHE_EDGE_TYPE_NUM_FILE_SUFFIX).c_str(), ios::in);
while(getline(edgeTypeNumIn, line)){
vector<string> strs = split(line, "\t");
int edge_type = atoi(strs[0].c_str());
int edge_type_num = atoi(strs[1].c_str());
edgeTypeNum[edge_type] = edge_type_num;
}
edgeTypeNumIn.close();
map<int, pair<set<int>, set<int>>> edgeTypeNodeTypes;
ifstream edgeTypeNodeTypeIn((inDir + dataset + DEFAULT_CACHE_EDGE_TYPE_NODE_TYPE_FILE_SUFFIX).c_str(), ios::in);
while(getline(edgeTypeNodeTypeIn, line)){
vector<string> strs = split(line, "\t");
int edge_type = atoi(strs[0].c_str());
vector<string> tmp1 = split(strs[1], ",");
set<int> input_node_types;
for(int i = 0 ; i < tmp1.size(); i++){
input_node_types.insert(atoi(tmp1[i].c_str()));
}
vector<string> tmp2 = split(strs[2], ",");
set<int> output_node_types;
for(int i = 0 ; i < tmp2.size(); i++){
output_node_types.insert(atoi(tmp2[i].c_str()));
}
edgeTypeNodeTypes[edge_type] = make_pair(input_node_types, output_node_types);
}
edgeTypeNodeTypeIn.close();
map<int, pair<double, double>> edgeTypeAvgDegree;
ifstream edgeTypeAvgDegreeIn((inDir + dataset + DEFAULT_CACHE_EDGE_TYPE_AVG_DEG_FILE_SUFFIX).c_str(), ios::in);
while(getline(edgeTypeAvgDegreeIn, line)){
vector<string> strs = split(line, "\t");
int edge_type = atoi(strs[0].c_str());
double avgInDegree = stod(strs[1].c_str());
double avgOutDegree = stod(strs[2].c_str());
edgeTypeAvgDegree[edge_type] = make_pair(avgInDegree, avgOutDegree);
}
edgeTypeAvgDegreeIn.close();
hin_graph_.node_type_num_ = nodeTypeNum;
hin_graph_.edge_type_num_ = edgeTypeNum;
hin_graph_.edge_type_avg_degree_ = edgeTypeAvgDegree;
hin_graph_.edge_type_node_types_ = edgeTypeNodeTypes;
}
void getMetaInfo(string dataset, string outDir){
HIN_Graph hin_graph_;
map<int, vector<Edge>> adj;
map<int, string> node_name;
map<int, string> node_type_name;
map<int, int> node_type_num;
map<int, vector<int>> node_id_to_type;
map<int, string> edge_name;
hin_graph_ = loadHinGraph(dataset.c_str(), node_name, adj, node_type_name, node_type_num, node_id_to_type, edge_name);
map<int, vector<HIN_Edge> > hin_edges_src_ = hin_graph_.edges_src_;
map<int, HIN_Node> hin_nodes_ = hin_graph_.nodes_;
map<int, int> edgeTypeNum;
map<int, int> nodeTypeNum;
map<int, pair<set<int>, set<int>>> edgeTypeNodes; // edge type -> (input nodes, output nodes)
map<int, pair<set<int>, set<int>>> edgeTypeNodeTypes; // edge type -> (input node types, output node types)
map<int, pair<double, double> > edgeTypeAvgDegree; // node type -> (average inner degree, average outer degree)
for( map<int, HIN_Node>::iterator iter = hin_nodes_.begin(); iter != hin_nodes_.end(); iter++){
vector<int> curr_node_types_id_ = iter->second.types_id_;
int node_types_num = curr_node_types_id_.size();
for(int i = 0; i < node_types_num; i++){
int curr_node_type = curr_node_types_id_[i];
if(nodeTypeNum.find(curr_node_type) != nodeTypeNum.end()){
nodeTypeNum[curr_node_type] += 1;
}else{
nodeTypeNum[curr_node_type] = 1;
}
}
}
for(map<int, vector<HIN_Edge> >::iterator iter = hin_edges_src_.begin(); iter != hin_edges_src_.end(); iter++){
int src_node_id = iter->first;
vector<HIN_Edge> curr_edges_src_ = iter->second;
for(vector<HIN_Edge>::iterator edge_iter = curr_edges_src_.begin(); edge_iter != curr_edges_src_.end(); edge_iter++){
if(hin_nodes_.find(src_node_id) != hin_nodes_.end()){
int edge_type = edge_iter->edge_type_;
if(edgeTypeNum.find(edge_type) != edgeTypeNum.end()){
edgeTypeNum[edge_type] += 1;
}else{
edgeTypeNum[edge_type] = 1;
}
int dst_node_id = edge_iter->dst_;
if(edgeTypeNodes.find(edge_type) == edgeTypeNodes.end()){
set<int> input_nodes;
set<int> output_nodes;
input_nodes.insert(src_node_id);
output_nodes.insert(dst_node_id);
edgeTypeNodes[edge_type] = make_pair(input_nodes, output_nodes);
set<int> input_node_types;
set<int> output_node_types;
for(int i = 0;i < hin_nodes_[src_node_id].types_id_.size(); i++){
input_node_types.insert(hin_nodes_[src_node_id].types_id_[i]);
}
for(int i = 0;i < hin_nodes_[dst_node_id].types_id_.size(); i++){
output_node_types.insert(hin_nodes_[dst_node_id].types_id_[i]);
}
edgeTypeNodeTypes[edge_type] = make_pair(input_node_types, output_node_types);
}else{
edgeTypeNodes[edge_type].first.insert(src_node_id);
edgeTypeNodes[edge_type].second.insert(dst_node_id);
for(int i = 0;i < hin_nodes_[src_node_id].types_id_.size(); i++){
edgeTypeNodeTypes[edge_type].first.insert(hin_nodes_[src_node_id].types_id_[i]);
}
for(int i = 0;i < hin_nodes_[dst_node_id].types_id_.size(); i++){
edgeTypeNodeTypes[edge_type].second.insert(hin_nodes_[dst_node_id].types_id_[i]);
}
}
}
}
}
for(map<int, pair<set<int>, set<int> > >::iterator iter = edgeTypeNodes.begin(); iter != edgeTypeNodes.end(); iter++){
int edge_type = iter->first;
if(edgeTypeNum.find(edge_type) != edgeTypeNum.end()){
int curr_edge_type_num = edgeTypeNum[edge_type];
edgeTypeAvgDegree[edge_type] = make_pair(curr_edge_type_num*1.0/iter->second.first.size(), curr_edge_type_num*1.0/iter->second.second.size());
}
}
// output
ofstream nodeTypeNumOut(outDir + dataset + DEFAULT_CACHE_NODE_TYPE_NUM_FILE_SUFFIX, ios::out);
for(map<int, int>::iterator iter = nodeTypeNum.begin(); iter != nodeTypeNum.end(); iter++){
nodeTypeNumOut << iter->first << "\t" << iter->second << endl;
}
nodeTypeNumOut.close();
ofstream edgeTypeNumOut(outDir + dataset + DEFAULT_CACHE_EDGE_TYPE_NUM_FILE_SUFFIX, ios::out);
for(map<int, int>::iterator iter = edgeTypeNum.begin(); iter != edgeTypeNum.end(); iter++){
edgeTypeNumOut << iter->first << "\t" << iter->second << endl;
}
edgeTypeNumOut.close();
ofstream edgeTypeNodeTypeOut(outDir + dataset + DEFAULT_CACHE_EDGE_TYPE_NODE_TYPE_FILE_SUFFIX, ios::out);
for(map<int, pair<set<int>, set<int>>>::iterator iter = edgeTypeNodeTypes.begin(); iter != edgeTypeNodeTypes.end(); iter++){
edgeTypeNodeTypeOut << iter->first << "\t";
vector<int> tmp1 = vector<int> (iter->second.first.begin(), iter->second.first.end());
if(tmp1.size() > 0){
edgeTypeNodeTypeOut << tmp1[0];
for(int i = 1; i < tmp1.size(); i++){
edgeTypeNodeTypeOut << "," << tmp1[i];
}
}
vector<int> tmp2 = vector<int> (iter->second.second.begin(), iter->second.second.end());
if(tmp2.size() > 0){
edgeTypeNodeTypeOut << "\t" <<tmp2[0];
for(int i = 1; i < tmp2.size(); i++){
edgeTypeNodeTypeOut << "," << tmp2[i];
}
edgeTypeNodeTypeOut << endl;
}
}
ofstream edgeTypeAvgDegreeOut(outDir + dataset + DEFAULT_CACHE_EDGE_TYPE_AVG_DEG_FILE_SUFFIX, ios::out);
for(map<int, pair<double, double>>::iterator iter = edgeTypeAvgDegree.begin(); iter != edgeTypeAvgDegree.end(); iter++){
edgeTypeAvgDegreeOut << iter -> first << "\t" << iter->second.first << "\t" << iter->second.second << endl;
}
edgeTypeAvgDegreeOut.close();
}
string getFileName(int src, int dst, string score_type, int k, string dataset, double beta){
return string(DEFAULT_OUTPUT_DIR) + "/" + dataset + "_" + score_type + "_" + to_string(beta) + "_" + to_string(src) + "_" + to_string(dst) + "_" + to_string(k) + ".txt";
}
void scoreSetup(const char* score_type, int penalty_type, double beta, bool bi_directional_flag, int sample_size){
TopKCalculator::penalty_type_ = penalty_type;
TopKCalculator::beta_ = beta;
TopKCalculator::bi_directional_flag_ = bi_directional_flag;
TopKCalculator::sample_size_ = sample_size;
if(strcmp(score_type, "MNIS") == 0){
TopKCalculator::support_type_ = 3;
TopKCalculator::rarity_type_ = 1;
}else if(strcmp(score_type, "SLV1") == 0){
TopKCalculator::support_type_ = 4;
TopKCalculator::rarity_type_ = 0;
TopKCalculator::penalty_type_ = 3;
}else if(strcmp(score_type, "SLV2") == 0){
TopKCalculator::support_type_ = 5;
TopKCalculator::rarity_type_ = 0;
TopKCalculator::penalty_type_ = 4;
}else if(strcmp(score_type, "SMP") == 0){
TopKCalculator::support_type_ = 0;
TopKCalculator::rarity_type_ = 0;
}
}