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Updated PEAR integration (markdown)
Pearloader::load cannot pass a second argument to the class constructor, I discovered this when attempting to use a package which required host and port to be set in the constructor of a class. I modified the definition of Pearloader::load here to use PHP reflection to pass multiple arguments to the constructor if an array is passed to Pearloader::load in the $options parameter.
More URL fixes
fixing permissions leftover from Git PHP lib interaction
[url=] replacement
replaced some bbcode en masse
replacing some old bbcode en masse
Convert headers (en masse)
Convert code blocks (en masse)
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