Update time series links csv #927
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| name: Update time series links csv | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| name: | |
| description: 'Update time series data links' | |
| required: false | |
| schedule: | |
| - cron: "10 0 * * *" | |
| - cron: "10 17 * * *" | |
| jobs: | |
| update_time_series_links_csv: | |
| runs-on: macOS-latest | |
| steps: | |
| - name: Checkout covidData repo | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("tidyverse", "dplyr", "httr", "readr", "here", "tidyr", "RSocrata")) | |
| shell: Rscript {0} | |
| - name: Update time series | |
| run: | | |
| library(httr) | |
| library(RSocrata) | |
| library(dplyr) | |
| library(here) | |
| setwd(here()) | |
| source("R/get_time_series_data_link.R") | |
| # get US data links | |
| jhu_us_deaths_data_links <- get_time_series_data_link(measure = "deaths", | |
| geography = "US", | |
| download_files = FALSE, | |
| download_recent = FALSE) | |
| write.csv(jhu_us_deaths_data_links, file = "data/jhu_us_deaths_data_links.csv", row.names = FALSE) | |
| jhu_us_cases_data_links <- get_time_series_data_link(measure = "cases", | |
| geography = "US", | |
| download_files = FALSE, | |
| download_recent = FALSE) | |
| write.csv(jhu_us_cases_data_links, file = "data/jhu_us_cases_data_links.csv", row.names = FALSE) | |
| # get global data links | |
| jhu_global_deaths_data_links <- get_time_series_data_link(measure = "deaths", | |
| geography = "global", | |
| download_files = FALSE, | |
| download_recent = FALSE) | |
| write.csv(jhu_global_deaths_data_links, file = "data/jhu_global_deaths_data_links.csv", row.names = FALSE) | |
| jhu_global_cases_data_links <- get_time_series_data_link(measure = "cases", | |
| geography = "global", | |
| download_files = FALSE, | |
| download_recent = FALSE) | |
| write.csv(jhu_global_cases_data_links, file = "data/jhu_global_cases_data_links.csv", row.names = FALSE) | |
| shell: Rscript {0} | |
| - name: Commit changes | |
| uses: EndBug/add-and-commit@v7 | |
| with: | |
| add: '["data/jhu_us_cases_data_links.csv", "data/jhu_us_deaths_data_links.csv", "data/jhu_global_cases_data_links.csv", "data/jhu_global_deaths_data_links.csv"]' | |
| message: "Update time series data links" | |
| default_author: github_actions | |
| push: true |