Update time series links #1640
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name: Update time series links | |
on: | |
workflow_dispatch: | |
inputs: | |
name: | |
description: 'Update time series data links' | |
required: false | |
schedule: | |
- cron: "0 0 * * *" | |
- cron: "0 17 * * *" | |
jobs: | |
update_time_series_links: | |
runs-on: macOS-latest | |
steps: | |
- name: Checkout covidData repo | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 | |
- name: Setup R | |
uses: r-lib/actions/setup-r@v2 | |
with: | |
use-public-rspm: true | |
- name: Install dependencies | |
run: | | |
install.packages(c("tidyverse", "dplyr", "httr", "readr", "here", "RSocrata")) | |
shell: Rscript {0} | |
- name: Update time series | |
run: | | |
library(httr) | |
library(RSocrata) | |
library(dplyr) | |
library(here) | |
setwd(here()) | |
source("R/get_time_series_data_link.R") | |
# get US data links | |
jhu_us_deaths_data_links <- get_time_series_data_link(measure = "deaths", | |
geography = "US", | |
download_files = FALSE, | |
download_recent = FALSE) | |
write.csv(jhu_us_deaths_data_links, file = "data/jhu_us_deaths_data_links.csv", row.names = FALSE) | |
jhu_us_cases_data_links <- get_time_series_data_link(measure = "cases", | |
geography = "US", | |
download_files = FALSE, | |
download_recent = FALSE) | |
write.csv(jhu_us_cases_data_links, file = "data/jhu_us_cases_data_links.csv", row.names = FALSE) | |
# get global data links | |
jhu_global_deaths_data_links <- get_time_series_data_link(measure = "deaths", | |
geography = "global", | |
download_files = FALSE, | |
download_recent = FALSE) | |
write.csv(jhu_global_deaths_data_links, file = "data/jhu_global_deaths_data_links.csv", row.names = FALSE) | |
jhu_global_cases_data_links <- get_time_series_data_link(measure = "cases", | |
geography = "global", | |
download_files = FALSE, | |
download_recent = FALSE) | |
write.csv(jhu_global_cases_data_links, file = "data/jhu_global_cases_data_links.csv", row.names = FALSE) | |
shell: Rscript {0} | |
- name: Commit changes | |
uses: EndBug/add-and-commit@v7 | |
with: | |
add: '["data/jhu_us_cases_data_links.csv", "data/jhu_us_deaths_data_links.csv", "data/jhu_global_cases_data_links.csv", "data/jhu_global_deaths_data_links.csv"]' | |
message: "Update time series data links" | |
default_author: github_actions | |
push: true |