pr_unittests.yaml

name: run unit tests
on: pull_request
jobs:
  run-unit-tests:
    name: run unit tests
    runs-on: macOS-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
    steps:
      - uses: actions/checkout@v3
        with:
          fetch-depth: 0
      - uses: r-lib/actions/setup-r@v2
        with:
          use-public-rspm: true
      - uses: r-lib/actions/setup-pandoc@v2
      - name: Cache R packages
        uses: actions/cache@v1
        with:
          path: ${{ env.R_LIBS_USER }}
          key: r-${{ hashFiles('DESCRIPTION') }}
      - name: Install dependencies
        run: |
          install.packages(c("remotes","devtools","readr","covidcast"))
          remotes::install_deps(dependencies = NA)
        shell: Rscript {0}
      - name: Install covidData
        run: make recent_data
        working-directory: ./code/data-processing
      - name: Run unit tests
        run: |
          devtools::test_active_file("tests/testthat/test-as_of.R", stop_on_failure = TRUE)
          devtools::test_active_file("tests/testthat/test-calc_jhu_global_cum.R", stop_on_failure = TRUE)
          devtools::test_active_file("tests/testthat/test-load_healthdata_data.R", stop_on_failure = TRUE)
          devtools::test_active_file("tests/testthat/test-load_jhu_data-reconstruct_time_series.R", stop_on_failure = TRUE)
          devtools::test_active_file("tests/testthat/test-location_code.R", stop_on_failure = TRUE)
          devtools::test_active_file("tests/testthat/test-preprocess_healthdata_data.R", stop_on_failure = TRUE)
        shell: Rscript {0}