diff --git a/python/lsst/ts/wep/task/calcZernikesTask.py b/python/lsst/ts/wep/task/calcZernikesTask.py
index 4b1c14889..b2617862e 100644
--- a/python/lsst/ts/wep/task/calcZernikesTask.py
+++ b/python/lsst/ts/wep/task/calcZernikesTask.py
@@ -224,23 +224,24 @@ def estimateZernikes(self, donutStampsExtra, donutStampsIntra):
             eulerZExtra = -detectorExtra.getOrientation().getYaw().asDegrees()
             eulerZIntra = -detectorIntra.getOrientation().getYaw().asDegrees()
 
-            # NOTE: TS_WEP expects these images to be transposed
-            # TODO: Look into this
             blendOffsetsExtra = self.calcBlendOffsets(donutExtra, eulerZExtra)
             blendOffsetsIntra = self.calcBlendOffsets(donutIntra, eulerZIntra)
 
+            # Transform image and coordinates from DVCS
+            # (Data Visualization Coordinate System)
+            # to ZCS (Zemax Coordinate System).
             wfEsti.setImg(
-                fieldXYExtra,
+                np.array([-fieldXYExtra[1], fieldXYExtra[0]]),
                 DefocalType.Extra,
                 filterLabel=getFilterTypeFromBandLabel(donutExtra.bandpass),
-                image=donutExtra.stamp_im.image.array,
+                image=np.fliplr(donutExtra.stamp_im.image.array.T),
                 blendOffsets=blendOffsetsExtra.tolist(),
             )
             wfEsti.setImg(
-                fieldXYIntra,
+                np.array([-fieldXYIntra[1], fieldXYIntra[0]]),
                 DefocalType.Intra,
                 filterLabel=getFilterTypeFromBandLabel(donutIntra.bandpass),
-                image=donutIntra.stamp_im.image.array,
+                image=np.fliplr(donutIntra.stamp_im.image.array.T),
                 blendOffsets=blendOffsetsIntra.tolist(),
             )
             wfEsti.reset()
diff --git a/python/lsst/ts/wep/task/cutOutDonutsBase.py b/python/lsst/ts/wep/task/cutOutDonutsBase.py
index 76a63c751..245e2171e 100644
--- a/python/lsst/ts/wep/task/cutOutDonutsBase.py
+++ b/python/lsst/ts/wep/task/cutOutDonutsBase.py
@@ -448,7 +448,7 @@ def cutOutStamps(self, exposure, donutCatalog, defocalType, cameraName):
             )
             xCornerList.append(xCorner)
             yCornerList.append(yCorner)
-            finalCutout = exposure[finalBBox]
+            finalCutout = exposure[finalBBox].clone()
 
             # Save MaskedImage to stamp
             finalStamp = finalCutout.getMaskedImage()
@@ -487,17 +487,6 @@ def cutOutStamps(self, exposure, donutCatalog, defocalType, cameraName):
             else:
                 blendCentroidPositions = np.array([["nan"], ["nan"]], dtype=float).T
 
-            camera = getCameraFromButlerName(cameraName)
-            detectorInfo = camera.get(detectorName)
-
-            # Rotate any sensors that are not lined up with the focal plane.
-            # Mostly just for the corner wavefront sensors. The negative sign
-            # creates the correct rotation based upon closed loop tests
-            # with R04 and R40 corner sensors.
-            eulerZ = -detectorInfo.getOrientation().getYaw().asDegrees()
-
-            finalStamp.image.array = rotate(finalStamp.image.array, eulerZ)
-
             donutStamp = DonutStamp(
                 stamp_im=finalStamp,
                 sky_position=lsst.geom.SpherePoint(
@@ -541,11 +530,21 @@ def cutOutStamps(self, exposure, donutCatalog, defocalType, cameraName):
                 shiftedMask -= 1
                 donutStamp.stamp_im.image.array *= shiftedMask
 
+            camera = getCameraFromButlerName(cameraName)
+            detectorInfo = camera.get(detectorName)
+
+            # Rotate any sensors that are not lined up with the focal plane.
+            # Mostly just for the corner wavefront sensors. The negative sign
+            # creates the correct rotation based upon closed loop tests
+            # with R04 and R40 corner sensors.
+            eulerZ = -detectorInfo.getOrientation().getYaw().asDegrees()
+            donutStamp.stamp_im.image.array = rotate(donutStamp.stamp_im.image.array, eulerZ)
+
             # NOTE: TS_WEP expects these images to be transposed
             # TODO: Look into this
-            if self.transposeImages:
-                donutStamp.stamp_im.image.array = donutStamp.stamp_im.image.array.T
-                donutStamp.mask_comp.array = donutStamp.mask_comp.array.T
+            # if self.transposeImages:
+            #     finalStamp.image.array = finalStamp.image.array.T
+
             donutStamp.stamp_im.setMask(donutStamp.mask_comp)
 
             finalStamps.append(donutStamp)