.travis.yml

sudo: required
language: java
jdk: openjdk8
services:
  - docker
python:
  - "2.7"

cache: pip

matrix:
  fast_finish: true

install:
  - "./scripts/install.sh --tool $TOOL_INSTALL"
  # Install nf-core/tools
  - git clone https://github.com/nf-core/tools.git /tmp/nf-core-tools
  - cd /tmp/nf-core-tools
  - pip install --user -e .
  # Get Kit Files
  - wget -O kits.tar.bz2 https://qbic-intranet.am10.uni-tuebingen.de/owncloud/index.php/s/Qvku3etEqb3PW58/download
  # Get tiny Reference Files
  # Reset
  - cd ${TRAVIS_BUILD_DIR}/tests

env:
  global:
    - NXF_VER=0.27.6 SGT_VER=2.4.2
  matrix:
    - PROFILE=docker TEST=TOOLS TOOL_INSTALL=ALL
    - PROFILE=singularity TEST=TOOLS TOOL_INSTALL=ALL

script:
  - "nf-core lint ${TRAVIS_BUILD_DIR}"
  - "./scripts/test.sh --profile $PROFILE --test $TEST"