These installation instructions were proposed by Claudio Jordi (ETH Zurich) in a GitHub issue. Since we do not have access to Macs, this has not been tested thorougly. Please comment in the issue and let us know if it works. know it works in the corresponding GitHub issue. For installation instructions for MacOS, please refer to:
In most cases, the following will suffice to compile pyGIMLi in the current directory.
#========================================
# First install:
# - Xcode (AppStore)
# - XQuartz (https://www.xquartz.org)
# - homebrew (https://brew.sh)
#========================================
# Install python3
brew install python3
brew install boost --with-python3
brew install boost-python --with-python3
# install some prerequisites that are not yet installed (might be more than what is here…)
brew install mercurial
brew install wget
# install matplotlib, … using pip3 (for python3)
pip3 install scipy
pip3 install numpy
pip3 install matplotlib
# follow installation instructions from pygimli.org
mkdir -p ~/src
cd src
mkdir -p gimli
cd gimli
git clone https://github.com/gimli-org/gimli.git
mkdir -p build
cd build
# The version (here 3.6.4_2) needs to be set to the installed python3 version
cmake ../gimli -DPYTHON_EXECUTABLE="/usr/local/bin/python3" -DPYTHON_INCLUDE_DIR=”/usr/local/Cellar/python3/3.6.4_2/Frameworks/Python.framework/Versions/3.6/include/python3.6m” -DPYTHON_LIBRARY="/usr/local/Cellar/python3/3.6.4_2/Frameworks/Python.framework/Versions/3.6/lib/libpython3.6.dylib" -DPY_NUMPY="/usr/local/lib/python3.6/site-packages/numpy”
# This was needed for the compilation of some c++ stuff
export CPLUS_INCLUDE_PATH=/usr/local/Cellar/python3/3.6.4_2/Frameworks/Python.framework/Versions/3.6/Headers
make -j 8
make pygimli
curl -Ls install.pygimli.org | bashNote
Conda packages for Mac OS will follow soon.