From fd5076c98acfaa28572e392712a5fd4420b20b20 Mon Sep 17 00:00:00 2001
From: John Omotani <john.omotani@ukaea.uk>
Date: Tue, 8 Oct 2024 12:38:29 +0100
Subject: [PATCH] check HDF5 without moment kinetics

---
 .github/workflows/parallel_test.yml | 23 ++++++++++++-----------
 1 file changed, 12 insertions(+), 11 deletions(-)

diff --git a/.github/workflows/parallel_test.yml b/.github/workflows/parallel_test.yml
index c413e23e3b..887971e1b6 100644
--- a/.github/workflows/parallel_test.yml
+++ b/.github/workflows/parallel_test.yml
@@ -21,17 +21,18 @@ jobs:
       - uses: julia-actions/cache@v2
       - run: |
           touch Project.toml
-          julia --project -O3 --check-bounds=no -e 'import Pkg; Pkg.add(["MPI", "MPIPreferences"]); using MPIPreferences; MPIPreferences.use_jll_binary("OpenMPI_jll")'
-          julia --project -O3 --check-bounds=no -e 'using MPI; MPI.install_mpiexecjl(; destdir=".")'
-          julia --project -O3 --check-bounds=no -e 'import Pkg; Pkg.add(["HDF5", "Random", "SpecialFunctions", "StatsBase", "Test"]); Pkg.develop(path="moment_kinetics/")'
-          julia --project -O3 --check-bounds=no -e 'import Pkg; Pkg.precompile()'
-          julia --project -O3 -e 'using MPI; using HDF5; println("check if HDF5 has parallel ", HDF5.has_parallel())'
-          # Need to use openmpi so that we can use `--oversubscribe` to allow using more MPI ranks than physical cores
-          ./mpiexecjl -np 3 --oversubscribe julia --project -O3 --check-bounds=no moment_kinetics/test/runtests.jl --ci --debug 1
-          ./mpiexecjl -np 4 --oversubscribe julia --project -O3 --check-bounds=no moment_kinetics/test/runtests.jl --ci --debug 1
-          ./mpiexecjl -np 2 --oversubscribe julia --project -O3 --check-bounds=no moment_kinetics/test/runtests.jl --ci --debug 1 --long
-          # Note: MPI.jl's default implementation is mpich, which has a similar option
-          # `--with-device=ch3:sock`, but that needs to be set when compiling mpich.
+          julia --project -e 'import Pkg; Pkg.add(["MPI", "HDF5"]); using MPI; using HDF5; println("plain check if HDF5 has parallel ", HDF5.has_parallel())'
+          # julia --project -O3 --check-bounds=no -e 'import Pkg; Pkg.add(["MPI", "MPIPreferences"]); using MPIPreferences; MPIPreferences.use_jll_binary("OpenMPI_jll")'
+          # julia --project -O3 --check-bounds=no -e 'using MPI; MPI.install_mpiexecjl(; destdir=".")'
+          # julia --project -O3 --check-bounds=no -e 'import Pkg; Pkg.add(["HDF5", "Random", "SpecialFunctions", "StatsBase", "Test"]); Pkg.develop(path="moment_kinetics/")'
+          # julia --project -O3 --check-bounds=no -e 'import Pkg; Pkg.precompile()'
+          # julia --project -O3 -e 'using MPI; using HDF5; println("check if HDF5 has parallel ", HDF5.has_parallel())'
+          # # Need to use openmpi so that we can use `--oversubscribe` to allow using more MPI ranks than physical cores
+          # ./mpiexecjl -np 3 --oversubscribe julia --project -O3 --check-bounds=no moment_kinetics/test/runtests.jl --ci --debug 1
+          # ./mpiexecjl -np 4 --oversubscribe julia --project -O3 --check-bounds=no moment_kinetics/test/runtests.jl --ci --debug 1
+          # ./mpiexecjl -np 2 --oversubscribe julia --project -O3 --check-bounds=no moment_kinetics/test/runtests.jl --ci --debug 1 --long
+          # # Note: MPI.jl's default implementation is mpich, which has a similar option
+          # # `--with-device=ch3:sock`, but that needs to be set when compiling mpich.
         shell: bash
 
   # macOS is slow at the moment, so only run one set of parallel tests