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Decide defaults for RTReadWalker #465

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magicDGS opened this issue Jun 5, 2018 · 0 comments
Open

Decide defaults for RTReadWalker #465

magicDGS opened this issue Jun 5, 2018 · 0 comments
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Priority: Low Status: Accepted Accepted in the project backlog Type: Question User/Developer question to be answer

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@magicDGS
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magicDGS commented Jun 5, 2018

After the #441 (implemented in #464), we should decide:

  • Default filters - currently the one from GATK (WellformedReadFilter) is the only available.
  • Transformers - currently the one for checking quality is the one used.
  • Arguments - currently no default argument exclusive for ReadTools is included

Maybe no default should be added, but it might be useful to have an argument collection with defaults to share between all ReadTools walker classes.
@magicDGS magicDGS added Priority: Low Type: Question User/Developer question to be answer Status: Accepted Accepted in the project backlog labels Jun 5, 2018
@magicDGS magicDGS mentioned this issue Jun 5, 2018
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