Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Reads not being used with lower uniting abundance #23

Open
skoren opened this issue Jul 24, 2023 · 0 comments
Open

Reads not being used with lower uniting abundance #23

skoren opened this issue Jul 24, 2023 · 0 comments

Comments

@skoren
Copy link
Contributor

skoren commented Jul 24, 2023

I ran MBG v1.0.14 with the same input corrected HiFi reads, the first run used --unitig-abundance 2 while the second one used --unitig-abundance 4. The run with the higher abundance has an example of about 30 reads which are completely missing in the other run. These reads are near the end of the chromosome and telomeric and extend the assembly by about 10kb. The reads are on globus under MBG_ missing_reads folder.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant