Add --log-level 1 #726

Workflow file for this run

	name: CI

	on:
	push:
	branches: [main]
	pull_request:
	branches: [main]
	merge_group:

	jobs:
	no-environment-file:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	with:
	environment-name: test
	create-args: >-
	python
	cython
	- run: \|
	micromamba info \| grep -q "environment : test"
	shell: bash -el {0}

	environment-file:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	with:
	environment-file: 'test/environment.yml'
	- run: \|
	micromamba info \| grep -q "environment : env-name"
	shell: bash -el {0}

	no-environment:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	with:
	micromamba-version: 2.0.2-0
	- run: \|
	micromamba info \| grep -q "environment : base"
	shell: bash -el {0}

	micromamba-old-version-1:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	with:
	micromamba-version: 1.4.5-0
	environment-file: 'test/environment.yml'
	- run: test "$(micromamba --version)" = 1.4.5
	shell: bash -el {0}

	micromamba-old-version-2:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	with:
	micromamba-version: 1.2.0-1 # this will throw a warning
	environment-file: 'test/environment.yml'
	- run: test "$(micromamba --version)" = 1.2.0
	shell: bash -el {0}

	micromamba-shell:
	strategy:
	matrix:
	os: [ubuntu-latest, macos-latest]
	runs-on: ${{ matrix.os }}
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	with:
	init-shell: ''
	environment-file: ''
	create-args: pytest
	environment-name: test
	- run: \|
	pytest --version
	python --version
	shell: micromamba-shell {0}

	bash:
	strategy:
	matrix:
	os: [ubuntu-latest, macos-latest, windows-latest]
	runs-on: ${{ matrix.os }}
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	with:
	init-shell: bash
	environment-file: 'test/environment.yml'
	- run: \|
	micromamba info \| grep -q "environment : env-name"
	shell: bash -el {0}

	multiple-shell-init:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	with:
	init-shell: >-
	bash
	powershell
	environment-file: 'test/environment.yml'
	- run: \|
	micromamba info \| grep -q "environment : env-name"
	shell: bash -el {0}
	- name: micromamba info (pwsh)
	run: micromamba info
	shell: pwsh
	# TODO: powershell equivalent of `micromamba info \| grep -q "environment : env-name"`

	cmd:
	runs-on: windows-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	with:
	init-shell: cmd.exe
	environment-file: 'test/environment.yml'
	- name: micromamba info (cmd.exe)
	run: micromamba info
	shell: cmd /C CALL {0}
	# TODO: cmd equivalent of `micromamba info \| grep -q "environment : env-name"`

	powershell:
	strategy:
	matrix:
	os: [ubuntu-latest, macos-latest, windows-latest]
	runs-on: ${{ matrix.os }}
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	with:
	init-shell: powershell
	environment-file: 'test/environment.yml'
	- name: micromamba info (pwsh)
	run: micromamba info
	shell: pwsh
	- name: micromamba info (powershell)
	if: matrix.os == 'windows-latest'
	run: micromamba info
	shell: powershell
	# TODO: powershell equivalent of `micromamba info \| grep -q "environment : env-name"`

	env-variable:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	with:
	environment-file: 'test/environment.yml'
	- run: \| # this should work even without `bash -l {0}`
	[ -n "$MAMBA_ROOT_PREFIX" ]
	[ -n "$MAMBA_EXE" ]
	[ -n "$CONDARC" ]

	custom-condarc:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	with:
	environment-file: 'test/environment.yml'
	condarc-file: 'test/.condarc'
	micromamba-version: 2.0.2-0
	- run: \| # this should only work when the pytorch channel is loaded, i.e., the custom condarc is used
	micromamba search pytorch=2.0.0
	micromamba search pytorch=2.0.0 \| grep -q "pytorch 2.0.0 py3.10_cpu_0"
	shell: bash -el {0}

	conda-lock:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	with:
	environment-file: 'test/conda-lock.yml'
	environment-name: locked-env
	- run: \|
	micromamba list \| grep -q "python 3.11.3 h2755cc3_0_cpython conda-forge"
	shell: bash -el {0}

	comment-in-environment-file:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	with:
	environment-file: 'test/environment2.yml'
	- run: \|
	micromamba info \| grep -q "environment : env-name2"
	shell: bash -el {0}
	- run: \|
	python --version \| grep -q "Python 3.10.1"
	# micromamba-shell uses the environment-name inferred by setup-micromamba
	shell: micromamba-shell {0}

	create-args-multiple-spaces-1:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	with:
	environment-name: test
	create-args: python pytest
	- run: \|
	micromamba list \| grep -q python
	micromamba list \| grep -q pytest
	shell: bash -el {0}

	create-args-multiple-spaces-2:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	with:
	environment-file: test/environment2.yml
	create-args: -c bioconda pytest
	- run: \|
	micromamba list \| grep -q python
	micromamba list \| grep -q pytest
	shell: bash -el {0}

	output-environment-path-env-file:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	id: setup-micromamba
	with:
	environment-file: 'test/environment.yml'
	- run: \|
	test ${{ steps.setup-micromamba.outputs.environment-path }} = "$HOME/micromamba/envs/env-name"
	ls ${{ steps.setup-micromamba.outputs.environment-path }}

	output-environment-path-env-name-overwrite:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	id: setup-micromamba
	with:
	environment-file: 'test/environment.yml'
	environment-name: test
	- run: \|
	test "${{ steps.setup-micromamba.outputs.environment-path }}" = /home/runner/micromamba/envs/test
	ls "${{ steps.setup-micromamba.outputs.environment-path }}"

	output-environment-path-custom-root-prefix:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	id: setup-micromamba
	with:
	environment-name: test
	micromamba-root-path: /home/runner/custom-micromamba-root-prefix
	- run: \|
	test "${{ steps.setup-micromamba.outputs.environment-path }}" = /home/runner/custom-micromamba-root-prefix/envs/test
	ls "${{ steps.setup-micromamba.outputs.environment-path }}"

	output-no-environment-path:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	id: setup-micromamba
	- run: \|
	test "${{ steps.setup-micromamba.outputs.environment-path }}" = ""

	check-micromamba-on-path:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: ./
	with:
	init-shell: none
	environment-file: test/environment.yml
	- run: \|
	echo $PATH
	echo "$(which micromamba)"
	echo "$(type micromamba)"
	echo "$(which micromamba-shell)"
	echo "${{ runner.temp }}"
	which micromamba \| grep /home/runner/micromamba-bin/micromamba
	type micromamba \| grep "micromamba is /home/runner/micromamba-bin/micromamba"
	which micromamba-shell \| grep "${{ runner.temp }}/setup-micromamba/micromamba-shell"
	shell: bash -el {0}

	use-micromamba-from-path:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Download micromamba
	run: \|
	curl -Ls https://github.com/mamba-org/micromamba-releases/releases/latest/download/micromamba-linux-64 -o /usr/local/bin/micromamba
	chmod +x /usr/local/bin/micromamba
	which micromamba
	- uses: ./
	with:
	environment-file: test/environment.yml
	download-micromamba: false
	- run: \|
	micromamba info \| grep -q "environment : env-name"
	shell: bash -elo pipefail {0}

	no-download-with-custom-path:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Download micromamba
	run: \|
	mkdir -p "$HOME/not-on-path/bin"
	curl -Ls https://github.com/mamba-org/micromamba-releases/releases/latest/download/micromamba-linux-64 -o "$HOME/not-on-path/bin/micromamba"
	chmod +x "$HOME/not-on-path/bin/micromamba"
	- uses: ./
	with:
	environment-file: test/environment.yml
	download-micromamba: false
	micromamba-binary-path: ~/not-on-path/bin/micromamba
	- run: \|
	micromamba info \| grep -q "environment : env-name"
	which micromamba \| grep not-on-path/bin
	shell: bash -elo pipefail {0}

	incorrect-condarc:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	# this should produce a warning
	- uses: ./
	with:
	condarc-file: test/.condarc.2
	- run: \|
	! micromamba info \| grep .condarc.2
	shell: bash -elo pipefail {0}

	correct-condarc:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	# this should produce a warning
	- uses: ./
	with:
	condarc-file: test/.condarc.yml
	- run: \|
	micromamba info \| grep .condarc.yml
	shell: bash -elo pipefail {0}

	# not properly testable
	# https://github.com/actions/runner/issues/2347
	# https://github.com/orgs/community/discussions/15452
	# create-args-no-env-name:
	# runs-on: ubuntu-latest
	# steps:
	# - uses: actions/checkout@v4
	# - uses: ./
	# with:
	# create-args: >-
	# python
	# pytest
	# - run: exit 1
	# if: success()

	# incorrect-version:
	# runs-on: ubuntu-latest
	# steps:
	# - uses: actions/checkout@v4
	# - uses: ./
	# with:
	# micromamba-version: '1.2.3'
	# - run: exit 1
	# if: success()

	# incorrect-log-level:
	# runs-on: ubuntu-latest
	# steps:
	# - uses: actions/checkout@v4
	# - uses: ./
	# with:
	# log-level: foo
	# - run: exit 1
	# if: success()

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Add --log-level 1 #726

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Add --log-level 1 #726

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Workflow file for this run