From ab6bf8bf7403e8023a094abeec19d6753bdc143e Mon Sep 17 00:00:00 2001 From: Ben Mares Date: Mon, 4 Nov 2024 23:48:37 +0000 Subject: [PATCH 1/4] bug: Propagate errors from micromamba-shell (#241) --- package.json | 2 +- src/resources/micromamba-shell | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/package.json b/package.json index 19b0184..73a97cd 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "setup-micromamba", - "version": "2.0.0", + "version": "2.0.1", "private": true, "description": "Action to setup micromamba", "scripts": { diff --git a/src/resources/micromamba-shell b/src/resources/micromamba-shell index 20801eb..3b1c8e5 100755 --- a/src/resources/micromamba-shell +++ b/src/resources/micromamba-shell @@ -4,4 +4,4 @@ # The script then executes the contents of the file. chmod +x $1 -$MAMBA_EXE run -r $MAMBA_ROOT_PREFIX -n $MAMBA_DEFAULT_ENV $1 +exec $MAMBA_EXE run -r $MAMBA_ROOT_PREFIX -n $MAMBA_DEFAULT_ENV $1 From 06375d89d211a1232ef63355742e9e2e564bc7f7 Mon Sep 17 00:00:00 2001 From: Julien Jerphanion Date: Mon, 25 Nov 2024 17:55:19 +0100 Subject: [PATCH 2/4] fix: Do not copy old Windows activation script as of 2.0.4 (#246) Signed-off-by: Julien Jerphanion Co-authored-by: Johan Mabille --- dist/licenses.txt | 1845 --------------------------------------------- dist/main.js | 8 +- package.json | 2 +- src/shell-init.ts | 8 +- 4 files changed, 13 insertions(+), 1850 deletions(-) delete mode 100644 dist/licenses.txt diff --git a/dist/licenses.txt b/dist/licenses.txt deleted file mode 100644 index 0fc71b4..0000000 --- a/dist/licenses.txt +++ /dev/null @@ -1,1845 +0,0 @@ -THE FOLLOWING SETS FORTH ATTRIBUTION NOTICES FOR THIRD PARTY SOFTWARE THAT MAY BE CONTAINED IN PORTIONS OF THIS PRODUCT - -The following software may be included in this product: @actions/cache (3.2.4) -This software contains the following license and notice below: - -The MIT License (MIT) - -Copyright 2019 GitHub - -Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: - -The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. - -THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. 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HISTORY OF THE SOFTWARE -========================== - -Python was created in the early 1990s by Guido van Rossum at Stichting -Mathematisch Centrum (CWI, see http://www.cwi.nl) in the Netherlands -as a successor of a language called ABC. Guido remains Python's -principal author, although it includes many contributions from others. - -In 1995, Guido continued his work on Python at the Corporation for -National Research Initiatives (CNRI, see http://www.cnri.reston.va.us) -in Reston, Virginia where he released several versions of the -software. - -In May 2000, Guido and the Python core development team moved to -BeOpen.com to form the BeOpen PythonLabs team. In October of the same -year, the PythonLabs team moved to Digital Creations, which became -Zope Corporation. In 2001, the Python Software Foundation (PSF, see -https://www.python.org/psf/) was formed, a non-profit organization -created specifically to own Python-related Intellectual Property. -Zope Corporation was a sponsoring member of the PSF. - -All Python releases are Open Source (see http://www.opensource.org for -the Open Source Definition). Historically, most, but not all, Python -releases have also been GPL-compatible; the table below summarizes -the various releases. - - Release Derived Year Owner GPL- - from compatible? (1) - - 0.9.0 thru 1.2 1991-1995 CWI yes - 1.3 thru 1.5.2 1.2 1995-1999 CNRI yes - 1.6 1.5.2 2000 CNRI no - 2.0 1.6 2000 BeOpen.com no - 1.6.1 1.6 2001 CNRI yes (2) - 2.1 2.0+1.6.1 2001 PSF no - 2.0.1 2.0+1.6.1 2001 PSF yes - 2.1.1 2.1+2.0.1 2001 PSF yes - 2.1.2 2.1.1 2002 PSF yes - 2.1.3 2.1.2 2002 PSF yes - 2.2 and above 2.1.1 2001-now PSF yes - -Footnotes: - -(1) GPL-compatible doesn't mean that we're distributing Python under - the GPL. All Python licenses, unlike the GPL, let you distribute - a modified version without making your changes open source. The - GPL-compatible licenses make it possible to combine Python with - other software that is released under the GPL; the others don't. - -(2) According to Richard Stallman, 1.6.1 is not GPL-compatible, - because its license has a choice of law clause. According to - CNRI, however, Stallman's lawyer has told CNRI's lawyer that 1.6.1 - is "not incompatible" with the GPL. - -Thanks to the many outside volunteers who have worked under Guido's -direction to make these releases possible. - - -B. TERMS AND CONDITIONS FOR ACCESSING OR OTHERWISE USING PYTHON -=============================================================== - -PYTHON SOFTWARE FOUNDATION LICENSE VERSION 2 --------------------------------------------- - -1. This LICENSE AGREEMENT is between the Python Software Foundation -("PSF"), and the Individual or Organization ("Licensee") accessing and -otherwise using this software ("Python") in source or binary form and -its associated documentation. - -2. Subject to the terms and conditions of this License Agreement, PSF hereby -grants Licensee a nonexclusive, royalty-free, world-wide license to reproduce, -analyze, test, perform and/or display publicly, prepare derivative works, -distribute, and otherwise use Python alone or in any derivative version, -provided, however, that PSF's License Agreement and PSF's notice of copyright, -i.e., "Copyright (c) 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, -2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020 Python Software Foundation; -All Rights Reserved" are retained in Python alone or in any derivative version -prepared by Licensee. - -3. 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This -Agreement may also be obtained from a proxy server on the Internet -using the following URL: http://hdl.handle.net/1895.22/1013". - -3. In the event Licensee prepares a derivative work that is based on -or incorporates Python 1.6.1 or any part thereof, and wants to make -the derivative work available to others as provided herein, then -Licensee hereby agrees to include in any such work a brief summary of -the changes made to Python 1.6.1. - -4. CNRI is making Python 1.6.1 available to Licensee on an "AS IS" -basis. CNRI MAKES NO REPRESENTATIONS OR WARRANTIES, EXPRESS OR -IMPLIED. BY WAY OF EXAMPLE, BUT NOT LIMITATION, CNRI MAKES NO AND -DISCLAIMS ANY REPRESENTATION OR WARRANTY OF MERCHANTABILITY OR FITNESS -FOR ANY PARTICULAR PURPOSE OR THAT THE USE OF PYTHON 1.6.1 WILL NOT -INFRINGE ANY THIRD PARTY RIGHTS. - -5. 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IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. \ No newline at end of file diff --git a/dist/main.js b/dist/main.js index da7a6db..c6cc7d2 100644 --- a/dist/main.js +++ b/dist/main.js @@ -82829,6 +82829,7 @@ var getOptions = () => { // src/shell-init.ts var fs3 = __toESM(require("fs/promises")); +var import_fs = require("fs"); var os4 = __toESM(require("os")); var import_path = __toESM(require("path")); var coreDefault3 = __toESM(require_core()); @@ -82846,8 +82847,11 @@ var copyMambaInitBlockToBashProfile = () => { }; var copyMambaBatToMicromambaBat = (options) => { const mambaBat = import_path.default.join(options.micromambaRootPath, "condabin", "mamba.bat"); - const micromambaBat = import_path.default.join(options.micromambaRootPath, "condabin", "micromamba.bat"); - return fs3.copyFile(mambaBat, micromambaBat); + if ((0, import_fs.existsSync)(mambaBat)) { + const micromambaBat = import_path.default.join(options.micromambaRootPath, "condabin", "micromamba.bat"); + return fs3.copyFile(mambaBat, micromambaBat); + } + return Promise.resolve(void 0); }; var shellInit = (options, shell) => { core4.startGroup(`Initialize micromamba for ${shell}.`); diff --git a/package.json b/package.json index 73a97cd..da3c581 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "setup-micromamba", - "version": "2.0.1", + "version": "2.0.2", "private": true, "description": "Action to setup micromamba", "scripts": { diff --git a/src/shell-init.ts b/src/shell-init.ts index 29ad0f5..3238ba7 100644 --- a/src/shell-init.ts +++ b/src/shell-init.ts @@ -39,8 +39,12 @@ const removeMambaInitBlockFromBashProfile = () => { const copyMambaBatToMicromambaBat = (options: Options) => { const mambaBat = path.join(options.micromambaRootPath, 'condabin', 'mamba.bat') - const micromambaBat = path.join(options.micromambaRootPath, 'condabin', 'micromamba.bat') - return fs.copyFile(mambaBat, micromambaBat) + + if (existsSync(mambaBat)) { + const micromambaBat = path.join(options.micromambaRootPath, 'condabin', 'micromamba.bat') + return fs.copyFile(mambaBat, micromambaBat) + } + return Promise.resolve(undefined) } export const shellInit = (options: Options, shell: string) => { From a580d2e4da4ae4a37715132b11502c6906e7ae2c Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 25 Nov 2024 18:40:07 +0100 Subject: [PATCH 3/4] Bump softprops/action-gh-release from 2.0.8 to 2.0.9 in the actions group (#239) Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Julien Jerphanion --- .github/workflows/release.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index a1fe6c2..1a89567 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -24,7 +24,7 @@ jobs: TAG_NAME: v${{ steps.version-metadata.outputs.newVersion }} - name: Create release if: steps.version-metadata.outputs.changed == 'true' - uses: softprops/action-gh-release@c062e08bd532815e2082a85e87e3ef29c3e6d191 + uses: softprops/action-gh-release@e7a8f85e1c67a31e6ed99a94b41bd0b71bbee6b8 with: generate_release_notes: true tag_name: v${{ steps.version-metadata.outputs.newVersion }} From 1d8f11622e0b2ec3a223671b748f8c40ac110351 Mon Sep 17 00:00:00 2001 From: Julien Jerphanion Date: Mon, 25 Nov 2024 19:01:11 +0100 Subject: [PATCH 4/4] docs: Mention v2 in README.md (#249) Signed-off-by: Julien Jerphanion Co-authored-by: Johan Mabille --- README.md | 56 ++++++++++++++++++++++++++++++++----------------------- 1 file changed, 33 insertions(+), 23 deletions(-) diff --git a/README.md b/README.md index 06ce535..eecd9fd 100644 --- a/README.md +++ b/README.md @@ -7,9 +7,8 @@ GitHub Action to set up the [micromamba](https://github.com/mamba-org/mamba#micr ## Usage ```yml -- uses: mamba-org/setup-micromamba@v1 +- uses: mamba-org/setup-micromamba@v2 with: - micromamba-version: '1.5.6-0' # any version from https://github.com/mamba-org/micromamba-releases environment-file: environment.yml init-shell: >- bash @@ -31,6 +30,17 @@ GitHub Action to set up the [micromamba](https://github.com/mamba-org/mamba#micr To see all available input arguments, see the [`action.yml`](action.yml) file. +### Micromamba version + +You can specify the version of micromamba to be installed using the `micromamba-version` input. + +```yml +- uses: mamba-org/setup-micromamba@v1 + with: + # Any version from https://github.com/mamba-org/micromamba-releases + micromamba-version: '1.5.6-0' +``` + ### Environment creation `setup-micromamba` allows you to create micromamba environments from an environment file or from a list of packages. @@ -44,7 +54,7 @@ This will automatically activate the environment when the shell is started. #### Create environment from environment file ```yml -- uses: mamba-org/setup-micromamba@v1 +- uses: mamba-org/setup-micromamba@v2 with: environment-file: environment.yml ``` @@ -55,7 +65,7 @@ Micromamba supports the `conda-lock` [unified lockfile format](https://conda.git Because `setup-micromamba` requires an environment name to be specified, config might look like this: ```yml -- uses: mamba-org/setup-micromamba@v1 +- uses: mamba-org/setup-micromamba@v2 with: environment-file: conda-lock.yml environment-name: ci @@ -69,7 +79,7 @@ Because `setup-micromamba` requires an environment name to be specified, config You can specify extra environment specs using the `create-args` input. ```yml -- uses: mamba-org/setup-micromamba@v1 +- uses: mamba-org/setup-micromamba@v2 with: # the create command looks like this: # `micromamba create -n test-env python=3.10 numpy` @@ -84,11 +94,11 @@ You can specify extra environment specs using the `create-args` input. You can specify custom arguments for the `micromamba create` command using the `create-args` input. See `micromamba create --help` for more information. > [!NOTE] -> This is the same argument as in the [previous example](#create-environment-from-environment-specs) but with different semantics. +> This is the same argument as in the [previous example](#create-environment-from-environment-specs) but with different semantics. > This is because internally, `setup-micromamba` uses the `micromamba create` command to create the environment from the environment file and there, extra specs are specified by adding them as extra arguments to the `micromamba create` command. ```yml -- uses: mamba-org/setup-micromamba@v1 +- uses: mamba-org/setup-micromamba@v2 with: environment-file: environment.yml create-args: -v @@ -102,7 +112,7 @@ By default, it will create shell initialization scripts for `bash`. If you want to customize this, you can use the `init-shell` input. ```yml -- uses: mamba-org/setup-micromamba@v1 +- uses: mamba-org/setup-micromamba@v2 with: init-shell: bash ``` @@ -112,7 +122,7 @@ In case you don't want to initialize your shell, you can set `init-shell` to `no You can also specify multiple shells by separating them with a space (or using the `>-` YAML block scalar) ```yml -- uses: mamba-org/setup-micromamba@v1 +- uses: mamba-org/setup-micromamba@v2 with: init-shell: >- bash @@ -137,7 +147,7 @@ You can set this behavior by specifying the `generate-run-shell` input (defaults > Only available on macOS and Linux. ```yml -- uses: mamba-org/setup-micromamba@v1 +- uses: mamba-org/setup-micromamba@v2 with: generate-run-shell: true environment-file: environment.yml @@ -161,14 +171,14 @@ The action will also set the `CONDARC` environment variable to point to this fil If nothing is specified, `setup-micromamba` will create a `.condarc` next to the micromamba binary with `conda-forge` as the only channel. ```yml -- uses: mamba-org/setup-micromamba@v1 +- uses: mamba-org/setup-micromamba@v2 with: environment-file: environment.yml condarc-file: /path/to/.condarc ``` ```yml -- uses: mamba-org/setup-micromamba@v1 +- uses: mamba-org/setup-micromamba@v2 with: environment-file: environment.yml condarc: | @@ -189,7 +199,7 @@ If `cache-environment` is set to `true` and `cache-environment-key` is not speci > `setup-micromamba` will append a hash of the environment file and the `custom-args` as well as the environment name and OS to the cache key. ```yml -- uses: mamba-org/setup-micromamba@v1 +- uses: mamba-org/setup-micromamba@v2 with: environment-file: environment.yml # only cache environment @@ -198,7 +208,7 @@ If `cache-environment` is set to `true` and `cache-environment-key` is not speci ``` ```yml -- uses: mamba-org/setup-micromamba@v1 +- uses: mamba-org/setup-micromamba@v2 with: environment-file: environment.yml # persist only for runs on this commit. @@ -210,7 +220,7 @@ If `cache-environment` is set to `true` and `cache-environment-key` is not speci - name: Get current date id: date run: echo "date=$(date +%Y-%m-%d)" >> "${GITHUB_OUTPUT}" -- uses: mamba-org/setup-micromamba@v1 +- uses: mamba-org/setup-micromamba@v2 with: environment-file: environment.yml # persist on the same day. @@ -230,7 +240,7 @@ The first one is the debug logging of the action itself. This can be enabled by running the action with the `ACTIONS_STEP_DEBUG` environment variable set to `true`. ```yml -- uses: mamba-org/setup-micromamba@v1 +- uses: mamba-org/setup-micromamba2v2 env: ACTIONS_STEP_DEBUG: true ``` @@ -248,7 +258,7 @@ The second type is the debug logging of the micromamba executable. This can be specified by setting the `log-level` input. ```yml -- uses: mamba-org/setup-micromamba@v1 +- uses: mamba-org/setup-micromamba@v2 with: environment-file: environment.yml # supports off, critical, error, warning, info, debug, trace @@ -276,7 +286,7 @@ There is a total of 4 options: If nothing is specified, `setup-micromamba` will default to `shell-init`. ```yml -- uses: mamba-org/setup-micromamba@v1 +- uses: mamba-org/setup-micromamba@v2 with: environment-file: environment.yml post-cleanup: environment @@ -287,7 +297,7 @@ If nothing is specified, `setup-micromamba` will default to `shell-init`. You also might want to alter the default micromamba installation location to a temporary location. You can use `micromamba-binary-path: ${{ runner.temp }}/bin/micromamba` to do this. ```yml -- uses: mamba-org/setup-micromamba@v1 +- uses: mamba-org/setup-micromamba@v2 with: environment-file: environment.yml # ${{ runner.temp }}\Scripts\micromamba.exe on Windows @@ -312,7 +322,7 @@ You can control the download behavior of micromamba with the options `download-m | Yes | true | set | Download to specified path | ```yml -- uses: mamba-org/setup-micromamba@v1 +- uses: mamba-org/setup-micromamba@v2 with: environment-file: environment.yml download-micromamba: false @@ -333,7 +343,7 @@ Due to a [security limitation of GitHub Actions](https://docs.github.com/en/acti any caches created on a branch will not be available on the main/parent branch after merging. This also applies to PRs. -In contrast, branches *can* use a cache created on the main/parent branch. +In contrast, branches *can* use a cache created on the main/parent branch. See also [this thread](https://github.com/mamba-org/provision-with-micromamba/issues/42#issuecomment-1062007161). @@ -378,8 +388,8 @@ Find the reasons below (taken from [setup-miniconda](https://github.com/conda-in disabled execution of `Command Processor/Autorun` Windows registry keys, which is what `micromamba shell init cmd.exe` sets. -For further information, see -[`jobs..steps[*].shell`](https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsshell) +For further information, see +[`jobs..steps[*].shell`](https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#jobsjob_idstepsshell) and [this thread](https://github.com/orgs/community/discussions/25061). ## Development