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DESCRIPTION
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Package: Esearch3D
Type: Package
Title: Leveraging gene expression and chromatin architecture to predict intergenic enhancers
Version: 0.1.0
Author: Giudice Luca
Maintainer: Giudice Luca <[email protected]>
Description: Software that leverages gene expression and chromatin architecture to predict intergenic enhancers and includes a graphic user interface to allow the interaction with single cell propagated profiles
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
Depends: R (>= 3.6.1),rlang,biomaRt (>= 2.0.0),plyr (>= 1.8.6),dplyr (>= 1.0.0),DT,fields (>= 11.0),spam (>= 2.5),plotfunctions (>= 1.0),visNetwork (>= 2.0.0),RCy3 (>= 2.6.0),shinyjs (>= 2.0.0),shinydashboard,shiny (>= 1.4.0),cppRouting (>= 2.0),igraph (>= 1.0),doParallel (>= 1.0),iterators (>= 1.0),foreach (>= 1.5.0),grid,parallel,stats,graphics,grDevices,utils,RcppParallel (>= 5.0.0),Matrix (>= 1.2.0),purrr,scales (>= 1.0.0),IRanges (>= 2.20.0),RcppZiggurat,data.table (>= 1.14.0),Rfast (>= 1.9.9),matrixStats (>= 0.56.0),data.table (>= 1.14.0),plotfunctions (>= 1.0),rmarkdown,knitr,htmltools (>= 0.5.2),BiocManager,bslib,future (>= 1.0.0),mlr3verse (>= 0.2),mlr3tuning (>= 0.8),mlr3learners (>= 0.4),mlr3viz (>= 0.5),DALEX (>= 2.0),DALEXtra (>= 2.0)
Suggests: R (>= 3.6.1),rlang,biomaRt (>= 2.0.0),plyr (>= 1.8.6),dplyr (>= 1.0.0),DT,fields (>= 11.0),spam (>= 2.5),plotfunctions (>= 1.0),visNetwork (>= 2.0.0),RCy3 (>= 2.6.0),shinyjs (>= 2.0.0),shinydashboard,shiny (>= 1.4.0),cppRouting (>= 2.0),igraph (>= 1.0),doParallel (>= 1.0),iterators (>= 1.0),foreach (>= 1.5.0),grid,parallel,stats,graphics,grDevices,utils,RcppParallel (>= 5.0.0),Matrix (>= 1.2.0),purrr,scales (>= 1.0.0),IRanges (>= 2.20.0),RcppZiggurat,data.table (>= 1.14.0),Rfast (>= 1.9.9),matrixStats (>= 0.56.0),data.table (>= 1.14.0),plotfunctions (>= 1.0),rmarkdown,knitr,htmltools (>= 0.5.2),BiocManager,bslib,future (>= 1.0.0),mlr3verse (>= 0.2),mlr3tuning (>= 0.8),mlr3learners (>= 0.4),mlr3viz (>= 0.5),DALEX (>= 2.0),DALEXtra (>= 2.0)
biocViews: IRanges (>= 2.20.0),biomaRt (>= 2.0.0),RCy3 (>= 2.6.0)
RoxygenNote: 7.1.0