Help for HG002 polishers

In this directory we'll keep PDF-formatted manuals and documentation of available data.

Resources (Note: Google Doc version is better for navigating links within document)

• Tips and tricks for evaluating regions using IGV (Google, GitHub)
• A list of available data for viewing in IGV (Google, GitHub)
• Guidelines for curating DeepVariant homozygous non-reference calls made on short read alignments (Google, GitHub)
• Guidelines for curating DeepVariant homozygous non-reference calls made on long read alignments to both haplotypes (Google, GitHub)
• Guidelines for curating DeepVariant homozygous non-reference calls made on long read alignments to separate haplotypes (Google, GitHub)
• Guidelines for curating regions flagged for coverage anomalies (Google, GitHub)
• Guidelines for curating regions with potential phase switch errors (Google, GitHub)