From 656829415c7438191532e74f24e46f86d2f4fc06 Mon Sep 17 00:00:00 2001 From: Peter Kroon Date: Thu, 5 Sep 2024 11:51:57 +0200 Subject: [PATCH 1/2] Add HIS(charmm)->HSE(martini22) mapping --- vermouth/data/mappings/his.charmm.mapping | 30 +++++++++++++++++++++++ 1 file changed, 30 insertions(+) create mode 100644 vermouth/data/mappings/his.charmm.mapping diff --git a/vermouth/data/mappings/his.charmm.mapping b/vermouth/data/mappings/his.charmm.mapping new file mode 100644 index 000000000..3cfe5816e --- /dev/null +++ b/vermouth/data/mappings/his.charmm.mapping @@ -0,0 +1,30 @@ +[ block ] +[ from ] +charmm +[ to ] +martini22 + +[ from blocks ] +HIS + +[ to blocks ] +HSE + +[ mapping ] + N BB + HN BB + CA BB + HA BB + CB SC1 +HB1 SC1 +HB2 SC1 +CD2 SC2 +HD2 SC2 + CG SC1 +NE2 SC2 +HE2 SC2 +ND1 SC3 +CE1 SC3 +HE1 SC3 + C BB + O BB \ No newline at end of file From a0ef3abcbf14bfdc12bfb595a99c89685788597d Mon Sep 17 00:00:00 2001 From: Peter Kroon Date: Thu, 5 Sep 2024 14:51:07 +0200 Subject: [PATCH 2/2] Add gromos(HIS)->martini22(HSE) mapping --- vermouth/data/mappings/his.gromos.mapping | 27 +++++++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 vermouth/data/mappings/his.gromos.mapping diff --git a/vermouth/data/mappings/his.gromos.mapping b/vermouth/data/mappings/his.gromos.mapping new file mode 100644 index 000000000..78425909c --- /dev/null +++ b/vermouth/data/mappings/his.gromos.mapping @@ -0,0 +1,27 @@ +[ block ] +[ from ] +gromos +[ to ] +martini22 + +[ from blocks ] +HIS + +[ to blocks ] +HSE + +[ mapping ] + N BB + H BB + CA BB + CB SC1 + CG SC1 +ND1 SC3 +HD1 SC3 +CD2 SC2 +HD2 SC2 +CE1 SC3 +HE1 SC3 +NE2 SC2 + C BB + O BB