-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathDNATest.java
138 lines (114 loc) · 3.24 KB
/
DNATest.java
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
import static org.junit.Assert.*;
import java.util.NoSuchElementException;
import org.junit.Test;
/**
*
* @author Haowei Chen hxc713
*
*/
public class DNATest {
/**
* Test the correctness of the toString method.
*/
@Test
public void testToString() {
DNA input = new DNA();
input.addToFront(DNA.Base.A);
input.addToBack(DNA.Base.C);
input.addToBack(DNA.Base.G);
input.addToBack(DNA.Base.T);
input.addToBack(DNA.Base.G);
input.addToBack(DNA.Base.T);
assertEquals("ACGTGT", input.toString());
}
/**
* Test the correctness of the string2DNA method.
*/
@Test
public void testString2DNA() {
DNA input = new DNA();
String s = new String();
s = "ACGTCTC";
assertEquals("ACGTCTC", input.string2DNA(s).toString() );
IllegalArgumentException exception = assertThrows(IllegalArgumentException.class,
()->{input.string2DNA("ACST");} );
}
/**
* Test the correctness of the Splice method.
*/
@Test
public void testSplice() {
DNA input = new DNA();
input.addToFront(DNA.Base.A);
input.addToBack(DNA.Base.C);
input.addToBack(DNA.Base.G);
input.addToBack(DNA.Base.T);
input.addToBack(DNA.Base.G);
input.addToBack(DNA.Base.T);
DNA input1 = new DNA();
input1.addToBack(DNA.Base.G);
input1.addToBack(DNA.Base.T);
input1.splice(input, 2);
assertEquals("GTGTGT", input1.toString());
assertEquals("GTGT", input.toString());
}
/**
* Test the correctness of the overlaps method.
*/
@Test
public void testOverlaps() {
DNA input = new DNA();
input.addToFront(DNA.Base.A);
input.addToBack(DNA.Base.C);
input.addToBack(DNA.Base.G);
input.addToBack(DNA.Base.T);
input.addToBack(DNA.Base.G);
input.addToBack(DNA.Base.T);
DNA input1 = new DNA();
input1.addToFront(DNA.Base.G);
input1.addToBack(DNA.Base.T);
input1.addToBack(DNA.Base.G);
input1.addToBack(DNA.Base.T);
input1.addToBack(DNA.Base.A);
input1.addToBack(DNA.Base.C);
assertEquals(true, DNA.overlaps(input1, input, 2));
assertEquals(false, DNA.overlaps(input1, input, 3));
}
/**
* Test the correctness of the main method.
*/
@Test
public void testMain() {
DNA input = new DNA();
input.addToFront(DNA.Base.A);
input.addToBack(DNA.Base.C);
input.addToBack(DNA.Base.G);
input.addToBack(DNA.Base.T);
input.addToBack(DNA.Base.G);
input.addToBack(DNA.Base.T);
DNA input1 = new DNA();
input1.addToFront(DNA.Base.G);
input1.addToBack(DNA.Base.T);
input1.addToBack(DNA.Base.G);
input1.addToBack(DNA.Base.T);
input1.addToBack(DNA.Base.A);
input1.addToBack(DNA.Base.C);
DNA input2 = new DNA();
input2.addToFront(DNA.Base.A);
input2.addToBack(DNA.Base.C);
input2.addToBack(DNA.Base.G);
input2.addToBack(DNA.Base.T);
DNA input3 = new DNA();
input3.addToFront(DNA.Base.A);
input3.addToBack(DNA.Base.C);
input3.addToBack(DNA.Base.G);
input3.addToBack(DNA.Base.T);
input3.addToBack(DNA.Base.G);
input3.addToBack(DNA.Base.T);
DNA.main(input, input1);
DNA.main(input3, input2);
assertEquals("TGT", input.toString());
assertEquals("GTGTACTGT", input1.toString());
assertEquals("ACGTCGTGT", input2.toString());
}
}