You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
For some reason that I haven't been able to narrow down any further, a certain article, "Mapping Evidence on the Burden of Breast, Cervical, and Prostate Cancers in Sub-Saharan Africa: A Scoping Review.", is lost by pmApiRequest().
library(pubmedR)
library(bibliometrix)
api_key <- NULL
query <- "(breast Cancer Incidence Mortality Years of Life Lost Years Lived With Disability Disability-Adjusted Life Years) OR ((Evaluating Family History Links between Breast Cancer and Prostate Cancer Among PLCO Trial Participants.) AND (Abdel-Rahman O[Author]))"
res <- pmQueryTotalCount(query = query, api_key = api_key)
articles <- pmApiRequest(query = query, limit = res$total_count, api_key = api_key)
The last line generates the comment: "Documents 47 of 47" in the RStudio Console. And
results in 46 only.
And comparing the pubmed search result in a web browser with the contents of the result of pmApiRequest (for example by means of
sink("articlesXML.txt")
print(articles)
sink()
and the find function in a text editor), shows that the one above mentioned review article is lost.
It must have something to do with that specific article, for running a query for only that article
query <- "(Mapping Evidence on the Burden of Breast, Cervical, and Prostate Cancers in Sub-Saharan Africa: A Scoping Review.) AND (Musekiwa[Author])"
res <- pmQueryTotalCount(query = query, api_key = api_key)
articles <- pmApiRequest(query = query, limit = res$total_count, api_key = api_key)
results in an Error:
Error: HTTP failure: 400
<?xml version="1.0" encoding="UTF-8" ?>
<!DOCTYPE eEfetchResult PUBLIC "-//NLM//DTD efetch 20131226//EN" "https://eutils.ncbi.nlm.nih.gov/eutils/dtd/20131226/efetch.dtd">
<eFetchResult>
<ERROR>Cannot retrieve history data: OUT OF RANGE. Parameter retstart=1 + 1 is greater than number of records available in history. History includes 1 IDs.</ERROR>
</eFetchResult>
The text was updated successfully, but these errors were encountered:
ideophone
changed the title
One article is lost by pmApiRequest
article is lost by pmApiRequest
Jul 18, 2022
For some reason that I haven't been able to narrow down any further, a certain article, "Mapping Evidence on the Burden of Breast, Cervical, and Prostate Cancers in Sub-Saharan Africa: A Scoping Review.", is lost by pmApiRequest().
This is my code (corresponding pubmed search in a web browser: https://pubmed.ncbi.nlm.nih.gov/?term=breast+Cancer+Incidence+Mortality+Years+of+Life+Lost+Years+Lived+With+Disability+Disability-Adjusted+Life+Years):
The last line generates the comment: "Documents 47 of 47" in the RStudio Console. And
results in 47.
But running
results in 46 only.
And comparing the pubmed search result in a web browser with the contents of the result of pmApiRequest (for example by means of
and the find function in a text editor), shows that the one above mentioned review article is lost.
It must have something to do with that specific article, for running a query for only that article
results in an Error:
The text was updated successfully, but these errors were encountered: