v3.0.1

patch to fix invalid pypi classifier in setup.py

v3.0.0: Merge pull request #50 from matsengrp/packagify

Big changes! See summary in #50.

v2.0.2: Merge pull request #48 from matsengrp/46-biopython-upgrade

Patch to upgrade Biopython, and some minor tidying

v2.0.1

Minor patch for python 3 compatibility when using color file (issue #40)

gctree-liaton

summary of changes

• Python 3.7
• Floating point ninjutsu to avoid numerical underflow
• Eliminate tail recursion in LeavesAndClades.logf likelihood via bottom-up memoization. Avoids recursion depth limits

Follow updated install instructions in README.md to set up a new Conda environment.

gctree-classic

The original gctree, as released in the MBE paper. Python 2.7